SMTL ID : 4v8p.2 (3 other biounits)

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.52 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

259 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain A: U.17 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain B: U.96 No protein-ligand interaction detected (PLIP) MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain O: N.57 No protein-ligand interaction detected (PLIP) MG.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.12: 1 residues within 4Å: Chain B: G.65 No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.15: 2 residues within 4Å: Chain 1: U.1927 Chain L: S.51 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.5, H2O.5, H2O.5, H2O.44, H2O.44, H2O.44 MG.16: 2 residues within 4Å: Chain N: Y.53, N.55 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain 1: A.1572 Chain N: R.67 No protein-ligand interaction detected (PLIP) MG.18: 3 residues within 4Å: Chain 1: G.2717, U.2718 Chain P: Q.158 No protein-ligand interaction detected (PLIP) MG.19: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.20: 1 residues within 4Å: Chain S: Y.132 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.7, H2O.7, H2O.29, H2O.29, H2O.29, H2O.29 MG.21: 1 residues within 4Å: Chain Y: Q.18 No protein-ligand interaction detected (PLIP) MG.22: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.24: 1 residues within 4Å: Chain 1: G.2592 No protein-ligand interaction detected (PLIP) MG.25: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.26: 1 residues within 4Å: Chain 1: A.55 No protein-ligand interaction detected (PLIP) MG.27: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain 1: A.46, G.47, G.280 No protein-ligand interaction detected (PLIP) MG.29: 1 residues within 4Å: Chain 1: G.47 No protein-ligand interaction detected (PLIP) MG.30: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.31: 1 residues within 4Å: Chain 1: G.2961 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain 1: A.61, G.62, U.321 No protein-ligand interaction detected (PLIP) MG.33: 1 residues within 4Å: Chain 1: C.34 No protein-ligand interaction detected (PLIP) MG.34: 1 residues within 4Å: Chain 1: A.38 No protein-ligand interaction detected (PLIP) MG.35: 6 residues within 4Å: Chain 1: A.2408, C.2410, U.2601, U.2602, G.2793, U.2794 No protein-ligand interaction detected (PLIP) MG.36: 2 residues within 4Å: Chain 1: C.986, G.2404 No protein-ligand interaction detected (PLIP) MG.37: 1 residues within 4Å: Chain 1: G.728 No protein-ligand interaction detected (PLIP) MG.38: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.39: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.40: 1 residues within 4Å: Chain 1: U.1165 No protein-ligand interaction detected (PLIP) MG.41: 3 residues within 4Å: Chain 1: G.733, A.735 Chain P: E.170 No protein-ligand interaction detected (PLIP) MG.42: 1 residues within 4Å: Chain 1: A.2751 No protein-ligand interaction detected (PLIP) MG.43: 2 residues within 4Å: Chain 1: G.143, A.145 No protein-ligand interaction detected (PLIP) MG.44: 1 residues within 4Å: Chain 1: A.142 No protein-ligand interaction detected (PLIP) MG.45: 2 residues within 4Å: Chain 1: A.127, G.128 No protein-ligand interaction detected (PLIP) MG.46: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.47: 1 residues within 4Å: Chain 1: G.215 No protein-ligand interaction detected (PLIP) MG.48: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.49: 2 residues within 4Å: Chain 1: G.273, U.284 No protein-ligand interaction detected (PLIP) MG.50: 1 residues within 4Å: Chain 1: U.2428 No protein-ligand interaction detected (PLIP) MG.51: 1 residues within 4Å: Chain 1: G.273 No protein-ligand interaction detected (PLIP) MG.52: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.53: 2 residues within 4Å: Chain 1: G.682, C.1458 No protein-ligand interaction detected (PLIP) MG.54: 1 residues within 4Å: Chain 1: C.339 No protein-ligand interaction detected (PLIP) MG.55: 1 residues within 4Å: Chain 1: G.357 No protein-ligand interaction detected (PLIP) MG.56: 3 residues within 4Å: Chain 1: A.395, A.397, G.1442 No protein-ligand interaction detected (PLIP) MG.57: 1 residues within 4Å: Chain 1: G.1443 No protein-ligand interaction detected (PLIP) MG.58: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.59: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain 1: U.1033 No protein-ligand interaction detected (PLIP) MG.61: 2 residues within 4Å: Chain 1: C.661 Chain Z: E.23 No protein-ligand interaction detected (PLIP) MG.62: 2 residues within 4Å: Chain 1: G.421, U.654 No protein-ligand interaction detected (PLIP) MG.63: 1 residues within 4Å: Chain 1: U.2375 No protein-ligand interaction detected (PLIP) MG.64: 1 residues within 4Å: Chain 1: A.2362 No protein-ligand interaction detected (PLIP) MG.65: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.66: 1 residues within 4Å: Chain 1: G.421 No protein-ligand interaction detected (PLIP) MG.67: 1 residues within 4Å: Chain 1: G.649 No protein-ligand interaction detected (PLIP) MG.68: 1 residues within 4Å: Chain 1: G.533 No protein-ligand interaction detected (PLIP) MG.69: 2 residues within 4Å: Chain 1: U.551, U.552 No protein-ligand interaction detected (PLIP) MG.70: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.71: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.72: 1 residues within 4Å: Chain 1: G.1392 No protein-ligand interaction detected (PLIP) MG.73: 2 residues within 4Å: Chain 1: G.1432 Chain Z: T.16 No protein-ligand interaction detected (PLIP) MG.74: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.75: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.76: 1 residues within 4Å: Chain 1: G.978 No protein-ligand interaction detected (PLIP) MG.77: 2 residues within 4Å: Chain 1: C.1168, A.1185 No protein-ligand interaction detected (PLIP) MG.78: 3 residues within 4Å: Chain 1: C.1183, U.1184 Chain B: G.83 No protein-ligand interaction detected (PLIP) MG.79: 4 residues within 4Å: Chain 1: C.672, A.2367, A.2368, G.2370 No protein-ligand interaction detected (PLIP) MG.80: 2 residues within 4Å: Chain 1: U.964, A.2805 No protein-ligand interaction detected (PLIP) MG.81: 1 residues within 4Å: Chain 1: G.1460 No protein-ligand interaction detected (PLIP) MG.82: 2 residues within 4Å: Chain 1: G.1470, U.1471 No protein-ligand interaction detected (PLIP) MG.83: 1 residues within 4Å: Chain 1: G.820 No protein-ligand interaction detected (PLIP) MG.84: 3 residues within 4Å: Chain 1: G.824, A.826, C.827 No protein-ligand interaction detected (PLIP) MG.85: 2 residues within 4Å: Chain 1: G.748, U.749 No protein-ligand interaction detected (PLIP) MG.86: 1 residues within 4Å: Chain 1: G.766 No protein-ligand interaction detected (PLIP) MG.87: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.88: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.89: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.90: 1 residues within 4Å: Chain 1: G.997 No protein-ligand interaction detected (PLIP) MG.91: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.92: 1 residues within 4Å: Chain 1: A.842 No protein-ligand interaction detected (PLIP) MG.93: 1 residues within 4Å: Chain 1: G.933 No protein-ligand interaction detected (PLIP) MG.94: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.95: 1 residues within 4Å: Chain 1: C.846 No protein-ligand interaction detected (PLIP) MG.96: 3 residues within 4Å: Chain 1: U.2411, G.2596 Chain C: P.207 No protein-ligand interaction detected (PLIP) MG.97: 1 residues within 4Å: Chain 1: G.1682 No protein-ligand interaction detected (PLIP) MG.98: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.99: 1 residues within 4Å: Chain 1: G.1822 No protein-ligand interaction detected (PLIP) MG.100: 2 residues within 4Å: Chain 1: A.1561, G.1562 No protein-ligand interaction detected (PLIP) MG.101: 1 residues within 4Å: Chain 1: U.1579 No protein-ligand interaction detected (PLIP) MG.102: 2 residues within 4Å: Chain 1: A.1954, A.2121 No protein-ligand interaction detected (PLIP) MG.103: 1 residues within 4Å: Chain 1: G.2390 No protein-ligand interaction detected (PLIP) MG.104: 2 residues within 4Å: Chain 1: G.857 Chain Q: A.87 No protein-ligand interaction detected (PLIP) MG.105: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.106: 2 residues within 4Å: Chain 1: G.2130, A.2319 No protein-ligand interaction detected (PLIP) MG.107: 1 residues within 4Å: Chain 1: U.913 No protein-ligand interaction detected (PLIP) MG.108: 1 residues within 4Å: Chain 1: U.854 No protein-ligand interaction detected (PLIP) MG.109: 1 residues within 4Å: Chain 1: C.2128 No protein-ligand interaction detected (PLIP) MG.110: 2 residues within 4Å: Chain 1: A.895, U.2133 No protein-ligand interaction detected (PLIP) MG.111: 1 residues within 4Å: Chain 1: G.892 No protein-ligand interaction detected (PLIP) MG.112: 1 residues within 4Å: Chain 1: A.1932 No protein-ligand interaction detected (PLIP) MG.113: 2 residues within 4Å: Chain 1: C.1504, U.1895 No protein-ligand interaction detected (PLIP) MG.114: 1 residues within 4Å: Chain 1: U.3055 No protein-ligand interaction detected (PLIP) MG.115: 1 residues within 4Å: Chain 1: C.1505 No protein-ligand interaction detected (PLIP) MG.116: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.117: 4 residues within 4Å: Chain 1: C.2864, C.2930, G.2931, U.2932 No protein-ligand interaction detected (PLIP) MG.118: 3 residues within 4Å: Chain 1: C.906, C.1477, A.1478 No protein-ligand interaction detected (PLIP) MG.119: 1 residues within 4Å: Chain 1: G.1875 No protein-ligand interaction detected (PLIP) MG.120: 1 residues within 4Å: Chain 1: C.2161 No protein-ligand interaction detected (PLIP) MG.121: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.122: 1 residues within 4Å: Chain 1: U.1579 No protein-ligand interaction detected (PLIP) MG.123: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.124: 1 residues within 4Å: Chain 1: G.2310 No protein-ligand interaction detected (PLIP) MG.125: 2 residues within 4Å: Chain 1: A.2944, G.2945 No protein-ligand interaction detected (PLIP) MG.126: 4 residues within 4Å: Chain 1: G.2180, A.2238, A.2239, U.2309 No protein-ligand interaction detected (PLIP) MG.127: 4 residues within 4Å: Chain 1: G.949, A.950, A.2408, G.2409 No protein-ligand interaction detected (PLIP) MG.128: 2 residues within 4Å: Chain 1: U.981, C.2715 No protein-ligand interaction detected (PLIP) MG.129: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.130: 1 residues within 4Å: Chain 1: U.2714 No protein-ligand interaction detected (PLIP) MG.131: 2 residues within 4Å: Chain 1: A.2839, C.2840 No protein-ligand interaction detected (PLIP) MG.132: 1 residues within 4Å: Chain 1: A.1396 No protein-ligand interaction detected (PLIP) MG.133: 4 residues within 4Å: Chain 1: C.994 Chain R: G.82 Chain h: S.16, G.20 No protein-ligand interaction detected (PLIP) MG.134: 2 residues within 4Å: Chain 1: U.1011 Chain X: D.95 No protein-ligand interaction detected (PLIP) MG.135: 2 residues within 4Å: Chain 1: U.1148, C.1164 No protein-ligand interaction detected (PLIP) MG.136: 1 residues within 4Å: Chain R: K.13 No protein-ligand interaction detected (PLIP) MG.137: 2 residues within 4Å: Chain 1: G.562, U.566 No protein-ligand interaction detected (PLIP) MG.138: 1 residues within 4Å: Chain 1: G.1020 No protein-ligand interaction detected (PLIP) MG.139: 4 residues within 4Å: Chain 1: A.2808, C.2854, U.2856, U.2857 No protein-ligand interaction detected (PLIP) MG.140: 3 residues within 4Å: Chain 1: A.2394, G.2395, G.2862 No protein-ligand interaction detected (PLIP) MG.141: 4 residues within 4Å: Chain 1: A.2392, A.2393, U.2861, G.2862 No protein-ligand interaction detected (PLIP) MG.142: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.143: 1 residues within 4Å: Chain 1: G.1337 No protein-ligand interaction detected (PLIP) MG.144: 1 residues within 4Å: Chain 1: G.1346 No protein-ligand interaction detected (PLIP) MG.145: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.146: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.147: 1 residues within 4Å: Chain 1: A.2875 No protein-ligand interaction detected (PLIP) MG.148: 1 residues within 4Å: Chain 1: G.2822 No protein-ligand interaction detected (PLIP) MG.149: 1 residues within 4Å: Chain 1: G.2819 No protein-ligand interaction detected (PLIP) MG.150: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.151: 2 residues within 4Å: Chain 1: A.1197, G.1198 No protein-ligand interaction detected (PLIP) MG.152: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.153: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.154: 1 residues within 4Å: Chain 1: G.1404 No protein-ligand interaction detected (PLIP) MG.155: 2 residues within 4Å: Chain 1: U.1405, G.1448 No protein-ligand interaction detected (PLIP) MG.156: 2 residues within 4Å: Chain 1: G.2803, G.2859 No protein-ligand interaction detected (PLIP) MG.157: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.158: 1 residues within 4Å: Chain 1: C.2353 No protein-ligand interaction detected (PLIP) MG.159: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.160: 1 residues within 4Å: Chain 1: U.1864 No protein-ligand interaction detected (PLIP) MG.161: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.162: 2 residues within 4Å: Chain 1: A.1513, C.1861 No protein-ligand interaction detected (PLIP) MG.163: 1 residues within 4Å: Chain 1: A.1863 No protein-ligand interaction detected (PLIP) MG.164: 1 residues within 4Å: Chain 1: G.1730 No protein-ligand interaction detected (PLIP) MG.165: 1 residues within 4Å: Chain 1: A.3061 No protein-ligand interaction detected (PLIP) MG.166: 1 residues within 4Å: Chain 1: G.3058 No protein-ligand interaction detected (PLIP) MG.167: 1 residues within 4Å: Chain 1: C.1868 No protein-ligand interaction detected (PLIP) MG.168: 1 residues within 4Å: Chain 1: U.1620 No protein-ligand interaction detected (PLIP) MG.169: 3 residues within 4Å: Chain 1: G.1517, G.1519 Chain 3: G.2 No protein-ligand interaction detected (PLIP) MG.170: 2 residues within 4Å: Chain 1: C.1553, G.1554 No protein-ligand interaction detected (PLIP) MG.171: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.172: 1 residues within 4Å: Chain 1: G.1831 No protein-ligand interaction detected (PLIP) MG.173: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.174: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.175: 1 residues within 4Å: Chain 1: G.2900 No protein-ligand interaction detected (PLIP) MG.176: 1 residues within 4Å: Chain 1: G.3285 No protein-ligand interaction detected (PLIP) MG.177: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.178: 1 residues within 4Å: Chain 1: G.2246 No protein-ligand interaction detected (PLIP) MG.179: 1 residues within 4Å: Chain 1: G.1923 No protein-ligand interaction detected (PLIP) MG.180: 1 residues within 4Å: Chain 1: G.1922 No protein-ligand interaction detected (PLIP) MG.181: 4 residues within 4Å: Chain 1: A.1920, G.1921, G.1922, G.1923 No protein-ligand interaction detected (PLIP) MG.182: 1 residues within 4Å: Chain 1: U.3043 No protein-ligand interaction detected (PLIP) MG.183: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.184: 2 residues within 4Å: Chain 1: G.1926, U.1927 No protein-ligand interaction detected (PLIP) MG.185: 1 residues within 4Å: Chain 1: A.2294 No protein-ligand interaction detected (PLIP) MG.186: 2 residues within 4Å: Chain 1: A.2275, G.2295 No protein-ligand interaction detected (PLIP) MG.187: 1 residues within 4Å: Chain 1: C.2325 No protein-ligand interaction detected (PLIP) MG.188: 1 residues within 4Å: Chain 1: C.2325 No protein-ligand interaction detected (PLIP) MG.189: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.190: 2 residues within 4Å: Chain 1: G.1963, G.1964 No protein-ligand interaction detected (PLIP) MG.191: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.192: 3 residues within 4Å: Chain 1: G.2189, A.2238, A.2308 No protein-ligand interaction detected (PLIP) MG.193: 3 residues within 4Å: Chain 1: U.2105, G.2106, G.2109 No protein-ligand interaction detected (PLIP) MG.194: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.195: 1 residues within 4Å: Chain 1: U.2261 No protein-ligand interaction detected (PLIP) MG.196: 3 residues within 4Å: Chain 1: A.2209, A.2210, C.2225 No protein-ligand interaction detected (PLIP) MG.197: 3 residues within 4Å: Chain 1: A.2347, G.2348, C.2349 No protein-ligand interaction detected (PLIP) MG.198: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.199: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.200: 1 residues within 4Å: Chain 1: U.1962 No protein-ligand interaction detected (PLIP) MG.201: 1 residues within 4Å: Chain 1: A.2736 No protein-ligand interaction detected (PLIP) MG.202: 1 residues within 4Å: Chain 1: G.2703 No protein-ligand interaction detected (PLIP) MG.203: 1 residues within 4Å: Chain 1: G.2902 No protein-ligand interaction detected (PLIP) MG.204: 1 residues within 4Å: Chain 1: A.2890 No protein-ligand interaction detected (PLIP) MG.205: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.206: 1 residues within 4Å: Chain 1: U.3008 No protein-ligand interaction detected (PLIP) MG.207: 1 residues within 4Å: Chain 1: A.3080 No protein-ligand interaction detected (PLIP) MG.208: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.209: 2 residues within 4Å: Chain 1: U.3093, A.3116 No protein-ligand interaction detected (PLIP) MG.210: 1 residues within 4Å: Chain 1: A.2651 No protein-ligand interaction detected (PLIP) MG.211: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.212: 3 residues within 4Å: Chain 1: G.962, A.987, U.2405 No protein-ligand interaction detected (PLIP) MG.213: 1 residues within 4Å: Chain 1: G.2649 No protein-ligand interaction detected (PLIP) MG.214: 2 residues within 4Å: Chain 1: U.706, A.707 No protein-ligand interaction detected (PLIP) MG.215: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.216: 1 residues within 4Å: Chain 1: G.3125 No protein-ligand interaction detected (PLIP) MG.217: 3 residues within 4Å: Chain 1: U.2999, A.3123 Chain K: R.73 No protein-ligand interaction detected (PLIP) MG.218: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.219: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.220: 2 residues within 4Å: Chain 1: U.8, G.9 No protein-ligand interaction detected (PLIP) MG.221: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.222: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.223: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.224: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.225: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.226: 2 residues within 4Å: Chain 1: G.1692, U.1693 No protein-ligand interaction detected (PLIP) MG.227: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.228: 2 residues within 4Å: Chain 1: A.1777, U.1798 No protein-ligand interaction detected (PLIP) MG.229: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.230: 2 residues within 4Å: Chain 1: U.1462, A.2397 No protein-ligand interaction detected (PLIP) MG.231: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.232: 1 residues within 4Å: Chain 1: U.410 No protein-ligand interaction detected (PLIP) MG.233: 1 residues within 4Å: Chain 1: G.2637 No protein-ligand interaction detected (PLIP) MG.234: 1 residues within 4Å: Chain 1: G.591 No protein-ligand interaction detected (PLIP) MG.235: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.236: 2 residues within 4Å: Chain 1: G.1490, G.1492 No protein-ligand interaction detected (PLIP) MG.237: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.238: 1 residues within 4Å: Chain 1: G.1539 No protein-ligand interaction detected (PLIP) MG.239: 1 residues within 4Å: Chain 1: G.196 No protein-ligand interaction detected (PLIP) MG.240: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.241: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.242: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.243: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.244: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.245: 1 residues within 4Å: Chain 1: U.327 No protein-ligand interaction detected (PLIP) MG.246: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.247: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.248: 1 residues within 4Å: Chain 1: G.1418 No protein-ligand interaction detected (PLIP) MG.249: 2 residues within 4Å: Chain 1: A.201, G.202 No protein-ligand interaction detected (PLIP) MG.250: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.251: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.252: 1 residues within 4Å: Chain 1: G.2989 No protein-ligand interaction detected (PLIP) MG.253: 1 residues within 4Å: Chain 1: G.2638 No protein-ligand interaction detected (PLIP) MG.254: 1 residues within 4Å: Chain 1: U.231 No protein-ligand interaction detected (PLIP) MG.255: 2 residues within 4Å: Chain 1: A.2651, A.2693 No protein-ligand interaction detected (PLIP) MG.256: 1 residues within 4Å: Chain 2: T.62 No protein-ligand interaction detected (PLIP) MG.257: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.260: 1 residues within 4Å: Chain 9: Q.9 No protein-ligand interaction detected (PLIP) MG.261: 1 residues within 4Å: Chain a: D.98 No protein-ligand interaction detected (PLIP) MG.264: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x ZN: ZINC ION(Non-covalent)

ZN.23: 4 residues within 4Å: Chain 0: C.39, C.42, C.57, C.60 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:C.39, 0:C.42, 0:C.57, 0:C.60 ZN.258: 4 residues within 4Å: Chain 2: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain 2 Metal complexes: 2:C.19, 2:C.22, 2:C.34, 2:C.37 ZN.259: 5 residues within 4Å: Chain 4: C.12, C.15, T.19, C.72, C.75 4 PLIP interactions: 4 interactions with chain 4 Metal complexes: 4:C.12, 4:C.15, 4:C.72, 4:C.75 ZN.262: 5 residues within 4Å: Chain a: C.96, C.99, C.110, C.115, S.118 4 PLIP interactions: 4 interactions with chain a Metal complexes: a:C.96, a:C.99, a:C.110, a:C.115 ZN.263: 5 residues within 4Å: Chain b: C.44, C.49, V.51, C.83, C.86 4 PLIP interactions: 4 interactions with chain b Metal complexes: b:C.44, b:C.49, b:C.83, b:C.86

Links

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Citation

Klinge, S. et al., Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6. Science (2011)

Release Date

2014-07-09

Peptides

RPL8: C
RIBOSOMAL PROTEIN L3: D
RPL4: E
60S RIBOSOMAL PROTEIN L11: F
60S RIBOSOMAL PROTEIN L9: G
RPL7A: H
RPLP0: I
60S RIBOSOMAL PROTEIN L10: J
60S RIBOSOMAL PROTEIN L13A: K
RPL23: L
60S RIBOSOMAL PROTEIN L27A: M
RIBOSOMAL PROTEIN L15: N
60S RIBOSOMAL PROTEIN L5: O
RPL18: P
RPL19: Q
60S RIBOSOMAL PROTEIN L21: R
RPL17: S
RPL23A: T
RPL26: U
RPL24: V
RPL35: W
60S RIBOSOMAL PROTEIN L7: X
60S RIBOSOMAL PROTEIN L31: Y
60S RIBOSOMAL PROTEIN L32: Z
RPL37A: 0
RIBOSOMAL PROTEIN L37: 2
RPL39: 3
60S RIBOSOMAL PROTEIN L36A: 4
RPL6: 5
RPL14: 6
RPL30: 7
RPL35A: 8
TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN: 9
UBIQUITIN-60S RIBOSOMAL PROTEIN L40: a
RPL34: b
RIBOSOMAL PROTEIN L22: c
RPL27: d
RPL28: e
RPL38: f
60S RIBOSOMAL PROTEIN L36: g
RPL29: h
RPL13: i
RPL18A: j

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
CA

D
CB

E
CC

F
CD

G
CE

H
CF

I
CG

J
CH

K
CI

L
CJ

M
CK

N
CL

O
CM

P
CN

Q
CO

R
CP

S
CQ

T
CR

U
CS

V
CT

W
CU

X
CV

Y
CW

Z
CX

0
CY

2
DA

3
DB

4
DC

5
DE

6
DF

7
DG

8
DH

9
DJ

a
DK

b
DL

c
DM

d
DN

e
DO

f
DP

g
DQ

h
DT

i
DU

j
DX

RPL8

RIBOSOMAL PROTEIN L3

RPL4

60S RIBOSOMAL PROTEIN L11

60S RIBOSOMAL PROTEIN L9

RPL7A

RPLP0

60S RIBOSOMAL PROTEIN L10

60S RIBOSOMAL PROTEIN L13A

RPL23

60S RIBOSOMAL PROTEIN L27A

RIBOSOMAL PROTEIN L15

60S RIBOSOMAL PROTEIN L5

RPL18

RPL19

60S RIBOSOMAL PROTEIN L21

RPL17

RPL23A

RPL26

RPL24

RPL35

60S RIBOSOMAL PROTEIN L7

60S RIBOSOMAL PROTEIN L31

60S RIBOSOMAL PROTEIN L32

RPL37A

RIBOSOMAL PROTEIN L37

RPL39

60S RIBOSOMAL PROTEIN L36A

RPL6

RPL14

RPL30

RPL35A

TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

RPL34

RIBOSOMAL PROTEIN L22

RPL27

RPL28

RPL38

60S RIBOSOMAL PROTEIN L36

RPL29

RPL13

RPL18A

Related Entries With Identical Sequence