SMTL ID : 4w4z.3 (3 other biounits)

Structure of the EphA4 LBD in complex with peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Q.70, P.150, L.151, S.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.70 GOL.2: 4 residues within 4Å: Chain A: R.71, D.147, V.148, G.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.71, A:R.71, A:D.147, A:G.149 GOL.3: 6 residues within 4Å: Chain A: T.7, L.8, L.9, D.10, S.13, V.14 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.7, A:D.10, A:D.10, A:S.13 GOL.4: 5 residues within 4Å: Chain A: S.23, N.56, W.58, I.112, E.114 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.23, A:S.23, A:N.56, A:I.112, A:E.114, A:E.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamberto, I. et al., Development and Structural Analysis of a Nanomolar Cyclic Peptide Antagonist for the EphA4 Receptor. Acs Chem.Biol. (2014)

Release Date

2014-10-08

Peptides

Ephrin type-A receptor 4: A
APY-bAla8.am peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

Ephrin type-A receptor 4

APY-bAla8.am peptide

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