SMTL ID : 4w50.4 (3 other biounits)

Structure of the EphA4 LBD in complex with peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BU2: 1,3-BUTANEDIOL(Non-covalent)

BU2.1: 3 residues within 4Å: Chain A: E.5, E.75, R.173 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.173

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: W.58, F.111, I.112, E.114, F.117 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.112, A:E.114, A:E.114, A:E.114 Water bridges: A:S.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamberto, I. et al., Development and Structural Analysis of a Nanomolar Cyclic Peptide Antagonist for the EphA4 Receptor. Acs Chem.Biol. (2014)

Release Date

2014-10-08

Peptides

Ephrin type-A receptor 4: A
APY peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

Ephrin type-A receptor 4

APY peptide

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