SMTL ID : 4wb3.3 (2 other biounits)

Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a-desArg complement anaphylatoxin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 5 residues within 4Å: Chain A: K.25, D.29 Chain B: U.5, G.6, G.32 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.29, H2O.2, H2O.2, H2O.3 CA.2: 8 residues within 4Å: Chain B: G.17, G.18, G.19, G.22, G.25, G.26, G.27, G.32 No protein-ligand interaction detected (PLIP) CA.3: 1 residues within 4Å: Chain B: C.34 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 3 residues within 4Å: Chain B: U.5, C.31, G.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yatime, L. et al., Structural basis for the targeting of complement anaphylatoxin C5a using a mixed L-RNA/L-DNA aptamer. Nat Commun (2015)

Release Date

2015-05-06

Peptides

Complement C5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Complement C5

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