SMTL ID : 4wb9.1

Human ALDH1A1 complexed with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 32 residues within 4Å: Chain A: I.166, I.167, P.168, W.169, N.170, K.193, P.194, A.195, E.196, Y.225, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, V.250, L.253, I.254, E.269, L.270, G.271, C.303, E.349, Q.350, K.353, E.400, F.402 Ligands: YB.3, CL.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.168 Hydrogen bonds: A:I.167, A:N.170, A:K.193, A:E.196, A:G.246, A:S.247, A:S.247, A:E.269, A:C.303, A:Q.350, A:K.353, A:K.353 pi-Stacking: A:F.402 NAI.7: 32 residues within 4Å: Chain B: I.166, I.167, P.168, W.169, N.170, K.193, P.194, A.195, E.196, Y.225, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, V.250, L.253, I.254, E.269, L.270, G.271, C.303, E.349, Q.350, K.353, E.400, F.402 Ligands: YB.9, CL.10 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:P.168 Hydrogen bonds: B:I.167, B:N.170, B:K.193, B:E.196, B:G.246, B:S.247, B:S.247, B:E.269, B:C.303, B:Q.350, B:K.353, B:K.353 pi-Stacking: B:F.402 NAI.13: 32 residues within 4Å: Chain C: I.166, I.167, P.168, W.169, N.170, K.193, P.194, A.195, E.196, Y.225, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, V.250, L.253, I.254, E.269, L.270, G.271, C.303, E.349, Q.350, K.353, E.400, F.402 Ligands: YB.15, CL.16 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:P.168 Hydrogen bonds: C:I.167, C:N.170, C:K.193, C:E.196, C:G.246, C:S.247, C:S.247, C:E.269, C:C.303, C:Q.350, C:K.353, C:K.353, C:E.400 pi-Stacking: C:F.402 NAI.19: 32 residues within 4Å: Chain D: I.166, I.167, P.168, W.169, N.170, K.193, P.194, A.195, E.196, Y.225, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, V.250, L.253, I.254, E.269, L.270, G.271, C.303, E.349, Q.350, K.353, E.400, F.402 Ligands: YB.21, CL.22 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:P.168 Hydrogen bonds: D:I.167, D:N.170, D:K.193, D:E.196, D:G.246, D:S.247, D:S.247, D:E.269, D:C.303, D:Q.350, D:K.353, D:K.353, D:E.400 pi-Stacking: D:F.402

8 x YB: YTTERBIUM (III) ION(Non-functional Binders)

YB.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.3: 4 residues within 4Å: Ligands: NAI.1, CL.4, CL.5, CL.6 No protein-ligand interaction detected (PLIP) YB.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.9: 4 residues within 4Å: Ligands: NAI.7, CL.10, CL.11, CL.12 No protein-ligand interaction detected (PLIP) YB.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.15: 4 residues within 4Å: Ligands: NAI.13, CL.16, CL.17, CL.18 No protein-ligand interaction detected (PLIP) YB.20: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.21: 4 residues within 4Å: Ligands: NAI.19, CL.22, CL.23, CL.24 No protein-ligand interaction detected (PLIP)

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: V.250 Ligands: NAI.1, YB.3, CL.5, CL.6 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: E.349 Ligands: YB.3, CL.4, CL.6 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: E.349 Ligands: YB.3, CL.4, CL.5 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: V.250 Ligands: NAI.7, YB.9, CL.11, CL.12 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: E.349 Ligands: YB.9, CL.10, CL.12 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: E.349 Ligands: YB.9, CL.10, CL.11 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain C: V.250 Ligands: NAI.13, YB.15, CL.17, CL.18 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain C: E.349 Ligands: YB.15, CL.16, CL.18 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain C: E.349 Ligands: YB.15, CL.16, CL.17 Ligand excluded by PLIP CL.22: 5 residues within 4Å: Chain D: V.250 Ligands: NAI.19, YB.21, CL.23, CL.24 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain D: E.349 Ligands: YB.21, CL.22, CL.24 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain D: E.349 Ligands: YB.21, CL.22, CL.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgan, C.A. et al., Development of a high-throughput in vitro assay to identify selective inhibitors for human ALDH1A1. Chem.Biol.Interact. (2015)

Release Date

2014-12-10

Peptides

Retinal dehydrogenase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Retinal dehydrogenase 1

Related Entries With Identical Sequence