SMTL ID : 4web.1

Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.109, S.110, S.111, Y.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.111, A:S.111 NAG.2: 3 residues within 4Å: Chain A: C.175, Y.179, N.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.179

6 x ARF: FORMAMIDE(Non-covalent)

ARF.3: 5 residues within 4Å: Chain A: R.185, E.192 Chain B: D.125, S.126 Chain C: E.81 7 PLIP interactions: 1 interactions with chain C, 5 interactions with chain A, 1 interactions with chain B Water bridges: C:E.81, A:E.192, A:E.192 Hydrogen bonds: A:R.185, A:E.192, A:R.194, B:D.125 ARF.4: 4 residues within 4Å: Chain B: H.188 Chain C: T.190, D.191, D.193 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.188 ARF.5: 6 residues within 4Å: Chain B: T.110, A.111, S.132, V.133, T.134, E.172 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.132, B:T.134 Water bridges: B:T.134 ARF.6: 4 residues within 4Å: Chain A: R.185 Chain B: D.119, S.121 Chain C: Y.75 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.119, B:S.121, A:R.185 ARF.7: 4 residues within 4Å: Chain B: E.61 Chain C: D.111, K.129, D.191 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:K.129, B:E.61 ARF.8: 7 residues within 4Å: Chain C: Q.63, K.65, K.71, R.87, F.88, E.107, D.108 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.63, C:Q.63, C:K.65, C:K.71, C:R.87, C:D.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khan, A.G. et al., Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2. Nature (2014)

Release Date

2014-12-17

Peptides

hepatitis C virus envelope glycoprotein 2: A
Mouse Fab Heavy Chain: B
Mouse Fab Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
L

hepatitis C virus envelope glycoprotein 2

Mouse Fab Heavy Chain

Mouse Fab Light Chain

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