SMTL ID : 7mww.1

Structure of hepatitis C virus envelope full-length glycoprotein 2 (eE2) from J6 genotype

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: C.241, N.244 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: N.175, S.177 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: R.227, C.241, Y.245, N.266 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.245 Hydrogen bonds: A:R.227, A:R.227, A:Y.245, A:N.266 NAG.4: 1 residues within 4Å: Chain A: N.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Structural insights into hepatitis C virus receptor binding and entry. Nature (2021)

Release Date

2021-09-15

Peptides

Core protein precursor eE2: A
2A12 Fab Heavy chain: B
2A12 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
L

Core protein precursor eE2

2A12 Fab Heavy chain

2A12 Fab light chain

Related Entries With Identical Sequence