SMTL ID : 4whv.2 (1 other biounit)

E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiquitin-B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 8.30 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.82, H.84, C.101, C.104 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.82, B:H.84, B:C.101, B:C.104 ZN.2: 5 residues within 4Å: Chain B: C.67, C.70, C.87, C.90, R.143 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.67, B:C.70, B:C.87, B:C.90 ZN.3: 4 residues within 4Å: Chain C: C.82, H.84, C.101, C.104 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.82, C:H.84, C:C.101, C:C.104 ZN.4: 5 residues within 4Å: Chain C: C.67, C.70, C.87, C.90, R.143 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.67, C:C.70, C:C.87, C:C.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodge, C.D. et al., RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. J.Biol.Chem. (2016)

Release Date

2015-09-30

Peptides

Ubiquitin-conjugating enzyme E2 N: AD
E3 ubiquitin-protein ligase RNF8: BC
Polyubiquitin-B: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

D
K

B
I

C
J

E
G

F
L

Ubiquitin-conjugating enzyme E2 N

E3 ubiquitin-protein ligase RNF8

Polyubiquitin-B

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