SMTL ID : 4wlm.2 (2 other biounits)

Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.168, L.261, D.262, C.263 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.262, A:C.263 Salt bridges: A:R.168 SO4.2: 6 residues within 4Å: Chain A: D.141, N.298, C.299, N.300 Ligands: SO4.3, MN.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.299, A:N.300 Salt bridges: A:K.30 SO4.3: 7 residues within 4Å: Chain A: E.169, Q.171, N.202, L.241, Q.244, N.298 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.202, A:Q.244

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.4: 4 residues within 4Å: Chain A: D.139, D.141, H.296 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.139, A:D.141, A:D.141, A:H.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, H. et al., Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. Nat.Chem.Biol. (2015)

Release Date

2015-09-30

Peptides

Xyloside xylosyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Xyloside xylosyltransferase 1

Related Entries With Identical Sequence