SMTL ID : 4wlz.2 (2 other biounits)

Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese and UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.139, D.141, H.296, N.298 Ligands: UDP.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.139, A:D.141, A:D.141, A:H.296

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 12 residues within 4Å: Chain A: M.17, F.18, T.19, L.27, K.30, D.139, L.140, D.141, H.296, N.298, C.299 Ligands: MN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:M.17, A:T.19, A:T.19, A:T.19, A:L.140, A:C.299 Salt bridges: A:K.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, H. et al., Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. Nat.Chem.Biol. (2015)

Release Date

2015-11-04

Peptides

Xyloside xylosyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Xyloside xylosyltransferase 1

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