SMTL ID : 4wms.1

STRUCTURE OF APO MBP-MCL1 AT 1.9A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.364 Ligands: FMT.14 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.364, H2O.1, H2O.3, H2O.3

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: T.367, Q.374, T.402, R.507, G.508, W.509, D.510 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.509 Water bridges: A:K.363, A:E.370 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 1 residues within 4Å: Chain A: E.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.39 Water bridges: A:W.11 FMT.6: 5 residues within 4Å: Chain A: K.16, Y.18, N.19, D.297, K.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.19, A:D.297, A:K.298 FMT.7: 2 residues within 4Å: Chain A: E.23, E.289 No protein-ligand interaction detected (PLIP) FMT.8: 4 residues within 4Å: Chain A: H.65, A.97, M.331, N.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.333, A:N.333 Water bridges: A:N.333 FMT.9: 5 residues within 4Å: Chain A: N.125, P.126, P.127, K.128, E.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.128 Water bridges: A:E.132, A:E.132 FMT.10: 4 residues within 4Å: Chain A: G.166, Y.168, K.171, N.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.171 Water bridges: A:N.186, A:N.186 FMT.11: 4 residues within 4Å: Chain A: A.325, Q.326, G.328, I.330 No protein-ligand interaction detected (PLIP) FMT.12: 4 residues within 4Å: Chain A: K.405, D.510, V.513, E.514 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.510, A:E.514, A:E.514 FMT.13: 4 residues within 4Å: Chain A: N.295, K.296, P.299, R.317 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.295, A:R.317 Water bridges: A:R.317 FMT.14: 6 residues within 4Å: Chain A: K.363, D.364, T.367, V.504, R.507 Ligands: MG.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.363, A:T.367 Water bridges: A:D.364, A:D.364, A:V.504

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clifton, M.C. et al., A Maltose-Binding Protein Fusion Construct Yields a Robust Crystallography Platform for MCL1. Plos One (2015)

Release Date

2015-05-06

Peptides

MBP-MCL1 chimera protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBP-MCL1 chimera protein

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