SMTL ID : 4wmw.1

The structure of MBP-MCL1 bound to ligand 5 at 1.9A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345 Water bridges: A:E.45, A:R.345

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.364 Ligands: FMT.11 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.364, H2O.1, H2O.2, H2O.2

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: N.457, W.458, W.502, Q.506, F.515 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.458 EDO.4: 6 residues within 4Å: Chain A: Y.91, F.93, V.111, A.302, V.303, M.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.303

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 2 residues within 4Å: Chain A: N.13, D.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.13 FMT.6: 3 residues within 4Å: Chain A: E.215, N.219, N.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.219 Water bridges: A:A.216 FMT.7: 1 residues within 4Å: Chain A: T.388 No protein-ligand interaction detected (PLIP) FMT.8: 5 residues within 4Å: Chain A: N.219, K.220, G.221, S.239, V.241 No protein-ligand interaction detected (PLIP) FMT.9: 4 residues within 4Å: Chain A: T.498, K.499, R.500, D.501 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.500, A:D.501 FMT.10: 4 residues within 4Å: Chain A: V.260, A.325, G.328, I.330 No protein-ligand interaction detected (PLIP) FMT.11: 6 residues within 4Å: Chain A: K.363, D.364, T.367, V.504, R.507 Ligands: MG.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.363, A:D.364, A:T.367 Water bridges: A:D.364

1 x 3R6: 2-hydroxy-5-(methylsulfanyl)benzoic acid(Non-covalent)

3R6.12: 8 residues within 4Å: Chain A: L.443, M.447, V.450, F.451, R.460, T.463, L.464, F.467 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.463 Salt bridges: A:R.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clifton, M.C. et al., A Maltose-Binding Protein Fusion Construct Yields a Robust Crystallography Platform for MCL1. Plos One (2015)

Release Date

2015-05-06

Peptides

MBP-MCL1 chimera protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBP-MCL1 chimera protein

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