SMTL ID : 4wmx.1

The structure of MBP-MCL1 bound to ligand 6 at 2.0A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345 Water bridges: A:E.45

1 x 3R7: 4-ethenyl-2-[(phenylsulfonyl)amino]benzoic acid(Non-covalent)

3R7.2: 10 residues within 4Å: Chain A: A.424, F.425, M.428, V.446, M.447, V.450, F.451, T.463, L.464, F.467 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.425, A:F.425, A:M.428, A:V.446, A:V.450, A:F.467, A:F.467, A:F.467 Water bridges: A:L.464 pi-Stacking: A:F.467

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: S.271, P.272, N.273, K.274, E.275 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.271, A:K.274, A:E.275 Water bridges: A:K.274, A:L.276 FMT.4: 2 residues within 4Å: Chain A: P.134, N.202 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.202 FMT.5: 5 residues within 4Å: Chain A: H.65, A.97, M.331, P.332, N.333 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.333, A:N.333 FMT.6: 2 residues within 4Å: Chain A: R.460, T.463 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.463, A:T.463 Water bridges: A:L.464 FMT.7: 5 residues within 4Å: Chain A: Q.336, A.339, Y.372, D.493, V.496 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.493 FMT.8: 5 residues within 4Å: Chain A: N.125, P.126, P.127, K.128, E.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.125, A:K.128 FMT.9: 2 residues within 4Å: Chain A: M.322, A.325 No protein-ligand interaction detected (PLIP) FMT.10: 4 residues within 4Å: Chain A: S.444, S.490, D.493, V.494 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.444 FMT.11: 5 residues within 4Å: Chain A: R.497, T.498, K.499, R.500, D.501 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.501 FMT.12: 6 residues within 4Å: Chain A: K.363, D.364, T.367, V.504, R.507 Ligands: MG.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.363, A:K.363, A:D.364, A:T.367

1 x MG: MAGNESIUM ION(Non-covalent)

MG.13: 2 residues within 4Å: Chain A: D.364 Ligands: FMT.12 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.364, H2O.1, H2O.1, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clifton, M.C. et al., A Maltose-Binding Protein Fusion Construct Yields a Robust Crystallography Platform for MCL1. Plos One (2015)

Release Date

2015-05-06

Peptides

MBP-MCL1 chimera protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBP-MCL1 chimera protein

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