SMTL ID : 4wmy.1 (1 other biounit)

Structure of Human intelectin-1 in complex with allyl-beta-galactofuranose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-trimer

Ligands

9 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: H.79, G.90, D.126, D.275 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.79, A:D.126, A:D.275, H2O.5, H2O.6 CA.2: 4 residues within 4Å: Chain A: E.80, D.82, G.85, D.91 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.82, A:G.85, A:D.91, H2O.4, H2O.7 CA.3: 4 residues within 4Å: Chain A: N.253, E.255, E.267 Ligands: 3S6.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.255, A:E.267, H2O.5, H2O.7 CA.5: 4 residues within 4Å: Chain B: H.79, G.90, D.126, D.275 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.79, B:D.126, B:D.275, H2O.16, H2O.17 CA.6: 4 residues within 4Å: Chain B: E.80, D.82, G.85, D.91 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.82, B:G.85, B:D.91, H2O.15, H2O.18 CA.7: 4 residues within 4Å: Chain B: N.253, E.255, E.267 Ligands: 3S6.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.255, B:E.267, H2O.16, H2O.18 CA.9: 4 residues within 4Å: Chain C: H.79, G.90, D.126, D.275 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.79, C:D.126, C:D.275, H2O.27, H2O.28 CA.10: 4 residues within 4Å: Chain C: E.80, D.82, G.85, D.91 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.82, C:G.85, C:D.91, H2O.26, H2O.28 CA.11: 4 residues within 4Å: Chain C: N.253, E.255, E.267 Ligands: 3S6.12 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.255, C:E.267, H2O.26, H2O.29

3 x 3S6: prop-2-en-1-yl beta-D-galactofuranoside(Non-covalent)

3S6.4: 7 residues within 4Å: Chain A: N.253, E.255, H.256, E.267, W.281, Y.290 Ligands: CA.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.290 Hydrogen bonds: A:E.255, A:E.267 Water bridges: A:N.253, A:E.267, A:E.267, A:E.267 3S6.8: 7 residues within 4Å: Chain B: N.253, E.255, H.256, E.267, W.281, Y.290 Ligands: CA.7 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.290 Hydrogen bonds: B:E.255, B:E.267 Water bridges: B:N.253, B:E.267, B:E.267, B:E.267 3S6.12: 7 residues within 4Å: Chain C: N.253, E.255, H.256, E.267, W.281, Y.290 Ligands: CA.11 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.290 Hydrogen bonds: C:E.267 Water bridges: C:N.253, C:E.267, C:E.267, C:E.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wesener, D.A. et al., Recognition of microbial glycans by human intelectin-1. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-07-01

Peptides

Intelectin-1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Intelectin-1

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