- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x CA: CALCIUM ION(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 2 residues within 4Å:- Chain A: R.138, R.144
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.138
- Salt bridges: A:R.138, A:R.144
PO4.13: 2 residues within 4Å:- Chain B: R.138, R.144
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.138
- Salt bridges: B:R.138, B:R.144
PO4.22: 2 residues within 4Å:- Chain C: R.138, R.144
3 PLIP interactions:3 interactions with chain C- Water bridges: C:R.138
- Salt bridges: C:R.138, C:R.144
- 12 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.5: 5 residues within 4Å:- Chain A: P.87, E.88, K.169, D.171, I.172
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.169, A:D.171
1PE.6: 4 residues within 4Å:- Chain A: S.205, F.207, T.208, K.233
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.231, A:K.233
1PE.7: 7 residues within 4Å:- Chain A: S.141, I.142, Y.187, D.188, L.189, G.190, K.194
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.190, A:K.194
1PE.8: 7 residues within 4Å:- Chain A: F.67, K.69, P.253, R.254, D.263, W.264, G.266
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.266
- Water bridges: A:R.254
1PE.14: 5 residues within 4Å:- Chain B: P.87, E.88, K.169, D.171, I.172
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.169, B:D.171
1PE.15: 4 residues within 4Å:- Chain B: S.205, F.207, T.208, K.233
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.231, B:K.233
1PE.16: 7 residues within 4Å:- Chain B: S.141, I.142, Y.187, D.188, L.189, G.190, K.194
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.190, B:K.194
1PE.17: 7 residues within 4Å:- Chain B: F.67, K.69, P.253, R.254, D.263, W.264, G.266
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.266
- Water bridges: B:R.254
1PE.23: 5 residues within 4Å:- Chain C: P.87, E.88, K.169, D.171, I.172
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.169, C:D.171
1PE.24: 4 residues within 4Å:- Chain C: S.205, F.207, T.208, K.233
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.231, C:K.233
1PE.25: 7 residues within 4Å:- Chain C: S.141, I.142, Y.187, D.188, L.189, G.190, K.194
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.190, C:K.194
1PE.26: 7 residues within 4Å:- Chain C: F.67, K.69, P.253, R.254, D.263, W.264, G.266
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.266
- Water bridges: C:R.254
- 3 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)
G3P.9: 7 residues within 4Å:- Chain A: N.236, E.238, H.239, E.250, W.264, W.273
- Ligands: CA.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.236, A:W.273
G3P.18: 7 residues within 4Å:- Chain B: N.236, E.238, H.239, E.250, W.264, W.273
- Ligands: CA.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.236, B:H.239, B:W.273
G3P.27: 7 residues within 4Å:- Chain C: N.236, E.238, H.239, E.250, W.264, W.273
- Ligands: CA.21
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.236, C:W.273
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wangkanont, K. et al., Structures of Xenopus Embryonic Epidermal Lectin Reveal a Conserved Mechanism of Microbial Glycan Recognition. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- XEEL protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x CA: CALCIUM ION(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 12 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 3 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wangkanont, K. et al., Structures of Xenopus Embryonic Epidermal Lectin Reveal a Conserved Mechanism of Microbial Glycan Recognition. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- XEEL protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A