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SMTL ID : 4woe.1
(1 other biounit)
The duplicated taurocyamine kinase from Schistosoma mansoni with bound transition state analog (TSA) components
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
monomer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
16 residues within 4Å:
Chain A:
S.119
,
T.120
,
R.121
,
R.123
,
H.182
,
R.226
,
M.230
,
R.277
,
S.279
,
V.280
,
H.281
,
R.305
,
E.310
,
D.320
Ligands:
MG.6
,
NO3.7
15
PLIP interactions
:
15 interactions with chain A
Hydrogen bonds:
A:S.119
,
A:R.277
,
A:S.279
,
A:E.310
Water bridges:
A:R.121
Salt bridges:
A:R.121
,
A:R.121
,
A:R.123
,
A:R.226
,
A:R.277
,
A:R.277
,
A:R.305
,
A:R.305
pi-Stacking:
A:H.281
,
A:H.281
ADP.2:
18 residues within 4Å:
Chain A:
S.482
,
R.484
,
R.486
,
H.545
,
W.581
,
R.589
,
R.640
,
S.642
,
V.643
,
L.644
,
R.669
,
L.671
,
Y.672
,
G.673
,
E.674
,
D.684
Ligands:
MG.5
,
NO3.8
21
PLIP interactions
:
21 interactions with chain A
Hydrogen bonds:
A:S.482
,
A:R.484
,
A:H.545
,
A:R.640
,
A:S.642
,
A:L.644
,
A:Y.672
,
A:E.674
Water bridges:
A:R.484
,
A:R.484
,
A:R.589
,
A:R.589
,
A:Y.672
Salt bridges:
A:R.484
,
A:R.486
,
A:R.589
,
A:R.640
,
A:R.640
,
A:R.669
,
A:R.669
pi-Cation interactions:
A:R.484
2 x
3S5
:
Taurocyamine
(Non-covalent)
3S5.3:
10 residues within 4Å:
Chain A:
A.59
,
L.60
,
L.61
,
R.63
,
V.191
,
E.222
,
C.268
,
S.270
,
N.271
Ligands:
NO3.7
8
PLIP interactions
:
8 interactions with chain A
Hydrogen bonds:
A:L.60
,
A:L.61
,
A:R.63
,
A:S.270
,
A:S.270
,
A:N.271
Salt bridges:
A:R.63
,
A:E.222
3S5.4:
10 residues within 4Å:
Chain A:
S.422
,
I.423
,
C.424
,
R.426
,
E.585
,
C.631
,
N.634
,
E.674
,
H.675
Ligands:
NO3.8
12
PLIP interactions
:
12 interactions with chain A
Hydrogen bonds:
A:I.423
,
A:C.424
,
A:R.426
,
A:S.633
,
A:S.633
,
A:N.634
Water bridges:
A:E.674
,
A:H.675
Salt bridges:
A:R.426
,
A:E.585
,
A:E.674
,
A:H.675
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.5:
3 residues within 4Å:
Chain A:
E.584
Ligands:
ADP.2
,
NO3.8
No protein-ligand interaction detected (PLIP)
MG.6:
3 residues within 4Å:
Chain A:
E.222
Ligands:
ADP.1
,
NO3.7
No protein-ligand interaction detected (PLIP)
2 x
NO3
:
NITRATE ION
(Non-functional Binders)
NO3.7:
8 residues within 4Å:
Chain A:
R.123
,
E.222
,
R.226
,
N.271
,
R.305
Ligands:
ADP.1
,
3S5.3
,
MG.6
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:R.123
,
A:R.226
,
A:N.271
,
A:R.305
,
A:R.305
NO3.8:
9 residues within 4Å:
Chain A:
R.486
,
E.585
,
R.589
,
N.634
,
R.669
,
E.674
Ligands:
ADP.2
,
3S5.4
,
MG.5
8
PLIP interactions
:
8 interactions with chain A
Hydrogen bonds:
A:R.486
,
A:E.585
,
A:R.589
,
A:R.589
,
A:N.634
,
A:R.669
,
A:R.669
,
A:E.674
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Merceron, R. et al., The Substrate-free and -bound Crystal Structures of the Duplicated Taurocyamine Kinase from the Human Parasite Schistosoma mansoni. J.Biol.Chem. (2015)
Release Date
2015-04-15
Peptides
Taurocyamine kinase:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
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Taurocyamine kinase
Related Entries With Identical Sequence
4wo8.1
|
4wod.1
|
4woe.2
Cartoon
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Tube
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Licorice
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