SMTL ID : 4wol.1

Crystal Structure of the DAP12 transmembrane domain in lipidic cubic phase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-trimer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: D.16, T.20 Chain B: D.16, T.20 Chain C: D.16, T.20 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Metal complexes: B:T.20, C:D.16, C:T.20, A:D.16, A:T.20

4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 8 residues within 4Å: Chain A: G.15, D.16 Chain B: P.6, L.9, A.10, V.13, D.16 Ligands: OLC.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.13, A:D.16 Hydrogen bonds: B:P.6 OLC.3: 12 residues within 4Å: Chain A: V.4, V.8, L.9, I.12 Chain B: L.9, I.12, G.15, D.16, L.19 Chain C: I.12, D.16 Ligands: OLC.2 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:L.9, B:D.16, B:L.19, C:D.16, A:I.12 OLC.4: 5 residues within 4Å: Chain C: L.22, A.26, F.29, R.32 Ligands: OLC.5 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:A.26, C:F.29 Hydrogen bonds: C:R.32, C:R.32 OLC.5: 8 residues within 4Å: Chain C: G.7, V.8, G.11, I.12, G.15, D.16, L.19 Ligands: OLC.4 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.19 Hydrogen bonds: C:G.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knoblich, K. et al., Transmembrane Complexes of DAP12 Crystallized in Lipid Membranes Provide Insights into Control of Oligomerization in Immunoreceptor Assembly. Cell Rep (2015)

Release Date

2015-06-03

Peptides

TYRO protein tyrosine kinase-binding protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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TYRO protein tyrosine kinase-binding protein

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