SMTL ID : 4wru.1

Crystal structure of Mycobacterium tuberculosis uracil-DNA glycosylase in complex with uracil, Form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x URA: URACIL(Non-covalent)

URA.1: 10 residues within 4Å: Chain A: G.77, Q.78, D.79, P.80, Y.81, S.91, F.92, N.138, H.202 Ligands: GOL.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.78, A:D.79, A:F.92, A:N.138, A:N.138, A:H.202 Water bridges: A:Y.81 pi-Stacking: A:Y.81, A:F.92

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: Y.81, R.103, S.104 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: Q.78, D.79, P.82, S.104, P.148, H.202, S.204 Ligands: URA.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.78, A:S.104, A:H.202 Water bridges: A:S.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arif, S.M. et al., Structural plasticity in Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) and its functional implications. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-07-15

Peptides

Uracil-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uracil-DNA glycosylase

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