- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.2: 13 residues within 4Å:- Chain A: P.23, Y.28, W.32, W.34, D.35, Q.103, G.163, Y.349, W.350, E.393, F.408, W.410
- Ligands: DGY.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.28, A:Q.103, A:Q.103, A:G.163
TRS.5: 13 residues within 4Å:- Chain B: P.23, Y.28, W.32, W.34, D.35, Q.103, G.163, Y.349, W.350, E.393, F.408, W.410
- Ligands: DGY.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.28, B:Q.103, B:Q.103, B:G.163
TRS.8: 13 residues within 4Å:- Chain C: P.23, Y.28, W.32, W.34, D.35, Q.103, G.163, Y.349, W.350, E.393, F.408, W.410
- Ligands: DGY.9
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Y.28, C:Q.103, C:Q.103, C:G.163
- 3 x DGY: (2R)-2,3-DIHYDROXYPROPANOIC ACID(Non-covalent)
DGY.3: 9 residues within 4Å:- Chain A: Y.28, W.32, H.71, Y.81, D.165, R.198, Y.204, Y.349
- Ligands: TRS.2
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:Y.28, A:H.71, A:D.165, A:Y.204, A:Y.349, A:Y.349, A:Y.349
- Water bridges: A:Y.81, A:Q.103, A:R.198, A:R.198
- Salt bridges: A:R.198
DGY.6: 9 residues within 4Å:- Chain B: Y.28, W.32, H.71, Y.81, D.165, R.198, Y.204, Y.349
- Ligands: TRS.5
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:Y.28, B:H.71, B:D.165, B:Y.204, B:Y.349, B:Y.349, B:Y.349
- Water bridges: B:Y.81, B:Q.103, B:R.198, B:R.198
- Salt bridges: B:R.198
DGY.9: 9 residues within 4Å:- Chain C: Y.28, W.32, H.71, Y.81, D.165, R.198, Y.204, Y.349
- Ligands: TRS.8
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:Y.28, C:H.71, C:D.165, C:Y.204, C:Y.349, C:Y.349, C:Y.349
- Water bridges: C:Y.81, C:Q.103, C:R.198, C:R.198
- Salt bridges: C:R.198
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyazaki, T. et al., Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8. J.Struct.Biol. (2015)
- Release Date
- 2015-03-11
- Peptides
- Uncharacterized protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x DGY: (2R)-2,3-DIHYDROXYPROPANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyazaki, T. et al., Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8. J.Struct.Biol. (2015)
- Release Date
- 2015-03-11
- Peptides
- Uncharacterized protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A