SMTL ID : 4x14.1

JC Mad-1 polyomavirus VP1 in complex with GM1 oligosaccharide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-pentamer
Ligands
5 x GOL: GLYCEROL(Non-functional Binders)
15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
5 x K: POTASSIUM ION(Non-covalent)
3 x SIA: O-SIALIC ACID(Non-covalent)
6 x GAL: BETA-D-GALACTOSE(Non-functional Binders)(Non-covalent)
3 x NGA: N-ACETYL-D-GALACTOSAMINE(Non-covalent)
2 x BGC: BETA-D-GLUCOSE(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Stroh, L.J. et al., The Greater Affinity of JC Polyomavirus Capsid for alpha 2,6-Linked Lactoseries Tetrasaccharide c than for Other Sialylated Glycans Is a Major Determinant of Infectivity. J.Virol. (2015)
Release Date
2015-04-22
Peptides
Major capsid protein VP1: ABCDE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E

Major capsid protein VP1

Toggle Identical (AD) Toggle Identical (BE)

Related Entries With Identical Sequence

3nxd.1 | 3nxd.2 | 3nxg.1 | 3nxg.2 | 4x15.1 | 4x16.1 | 4x17.1