SMTL ID : 4x2j.1

Selection of fragments for kinase inhibitor design: decoration is key

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x 3WN: 4-[(3-aminophenyl)amino]pyrido[2,3-d]pyrimidin-5(8H)-one(Non-covalent)

3WN.1: 14 residues within 4Å: Chain A: I.13, V.21, A.32, K.34, E.47, Y.51, L.62, S.82, D.83, Y.84, H.85, G.88, L.142, D.153 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.13, A:A.32, A:K.34, A:L.62, A:L.142 Hydrogen bonds: A:E.47, A:S.82, A:H.85, A:H.85, A:D.153

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.139, R.179, S.236, D.237, P.238 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.237 Water bridges: A:K.139, A:K.139, A:K.139, A:K.139 Salt bridges: A:K.139, A:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czodrowski, P. et al., Selection of fragments for kinase inhibitor design: decoration is key. J.Med.Chem. (2015)

Release Date

2014-12-24

Peptides

TGF-beta receptor type-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TGF-beta receptor type-1

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