SMTL ID : 4x46.1

X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: H.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.15 EDO.2: 2 residues within 4Å: Chain A: R.23, N.27 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.23, A:R.23, A:N.27 Water bridges: A:R.30, A:R.30 EDO.3: 1 residues within 4Å: Chain A: R.115 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.117, A:K.190, A:K.190

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: P.270, R.271, R.388 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.388, A:R.388, A:R.388 Salt bridges: A:R.388 SO4.5: 4 residues within 4Å: Chain A: A.175, T.176, V.177, D.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.177, A:D.178 Water bridges: A:D.178 SO4.6: 3 residues within 4Å: Chain A: G.14, H.15, A.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.14, A:A.16 Salt bridges: A:H.15 SO4.7: 4 residues within 4Å: Chain A: I.285, D.292, D.293, R.437 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.293 Water bridges: A:R.437 Salt bridges: A:R.437 SO4.8: 2 residues within 4Å: Chain A: Q.5, R.9 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.9, A:R.9 Salt bridges: A:R.9 SO4.9: 4 residues within 4Å: Chain A: K.84, S.86, S.95, T.123 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.95, A:S.95, A:S.113, A:T.123, A:T.123 Water bridges: A:T.94, A:T.94, A:T.123, A:K.191, A:K.191, A:K.191 Salt bridges: A:K.84 SO4.10: 6 residues within 4Å: Chain B: K.84, H.85, S.86, S.95, S.113, T.123 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.86, B:S.95, B:T.123, B:T.123 Water bridges: B:K.84, B:S.86, B:S.86, B:S.95, B:T.123 Salt bridges: B:K.84 SO4.11: 3 residues within 4Å: Chain B: P.270, R.271, R.388 3 PLIP interactions: 3 interactions with chain B Water bridges: B:L.389, B:D.391 Salt bridges: B:R.388 SO4.12: 3 residues within 4Å: Chain B: Y.267, P.270, R.388 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.388 SO4.13: 4 residues within 4Å: Chain B: A.175, T.176, V.177, D.178 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.177, B:D.178 SO4.14: 3 residues within 4Å: Chain B: L.423, D.424, D.425 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.424, B:D.425 Water bridges: B:D.425, B:D.425, B:D.425 SO4.15: 2 residues within 4Å: Chain B: D.292, D.293 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.293 Water bridges: B:A.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balaev, V.V. et al., X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A. To Be Published

Release Date

2015-12-23

Peptides

Thymidine phosphorylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidine phosphorylase

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