SMTL ID : 4x6x.1

Human soluble epoxide hydrolase in complex with a three substituted cyclopropane derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x S74: 3-{4-[(1-{[(1s,2R,3S)-2,3-diphenylcyclopropyl]carbamoyl}piperidin-4-yl)oxy]phenyl}propanoic acid(Non-covalent)

S74.1: 17 residues within 4Å: Chain A: F.48, D.116, W.117, M.120, P.142, I.144, Y.164, Q.165, F.168, L.189, M.200, Y.247, V.279, L.280, M.284, H.305, W.306 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.48, A:F.48, A:W.117, A:W.117, A:P.142, A:I.144, A:Y.164, A:Y.164, A:F.168, A:L.189, A:V.279, A:V.279, A:L.280, A:H.305, A:W.306 Hydrogen bonds: A:D.116, A:Y.164 pi-Stacking: A:H.305 S74.2: 18 residues within 4Å: Chain B: F.48, D.116, W.117, M.120, I.144, Y.164, Q.165, F.168, L.189, M.200, L.209, Y.247, D.277, V.279, L.280, M.284, H.305, W.306 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.48, B:F.48, B:Y.164, B:Y.164, B:F.168, B:L.189, B:L.209, B:V.279, B:V.279, B:L.280, B:H.305, B:W.306 Hydrogen bonds: B:D.116, B:Y.247 pi-Stacking: B:H.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takai, K. et al., Three-dimensional rational approach to the discovery of potent substituted cyclopropyl urea soluble epoxide hydrolase inhibitors. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-04-08

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional epoxide hydrolase 2

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