SMTL ID : 4xer.1 (1 other biounit)

Crystal Structure of C2 form of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: A.196, I.213, G.214 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.196, A:I.213 Hydrogen bonds: A:G.214

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.22, D.23, S.53, N.106 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.22, A:D.23, A:S.53, H2O.4, H2O.4

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain B: P.109, N.110, D.114, Y.117, S.118 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.110, B:N.110, B:D.114, B:D.114 Water bridges: B:N.106, B:N.106, B:G.119

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 7 residues within 4Å: Chain A: L.59, Y.87 Chain B: A.196, I.213, G.214, P.215, P.216 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.213, A:L.59, A:Y.87 Hydrogen bonds: B:G.214

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain B: D.22, D.23, N.106 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.22, B:D.23, H2O.14, H2O.14, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathiharan, Y.K. et al., Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-09-09

Peptides

5'/3'-nucleotidase SurE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'/3'-nucleotidase SurE

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