SMTL ID : 4xg0.2 (1 other biounit)

Crystal structure of a domain of unknown function (DUF1537) from Bordetella bronchiseptica (BB3215), Target EFI-511620, with bound citrate, domain swapped dimer, space group C2221

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: D.34, T.36, G.37, R.81, K.110, D.112, S.113, R.116, F.142, R.147, S.239 Chain B: F.407 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.36 Hydrogen bonds: A:G.37, A:R.81, A:D.112, A:D.112, A:S.113, A:R.116, A:R.147 Water bridges: A:R.81, A:K.110, A:D.112, A:R.147 Salt bridges: A:R.81, A:R.81, A:K.110, A:K.110 CIT.6: 12 residues within 4Å: Chain A: F.407 Chain B: D.34, T.36, G.37, R.81, K.110, D.112, S.113, R.116, F.142, R.147, S.239 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:T.36 Hydrogen bonds: B:G.37, B:R.81, B:D.112, B:S.113, B:R.116, B:R.147 Water bridges: B:R.81, B:K.110, B:D.112, B:R.147 Salt bridges: B:R.81, B:R.81, B:K.110, B:K.110

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: T.264, S.265, G.359, G.360, D.361 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: T.264, S.265, G.359, G.360, D.361 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: Q.44, A.244, P.245, R.248 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.44 Salt bridges: A:R.248 SO4.4: 2 residues within 4Å: Chain A: T.382, R.415 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.415 SO4.5: 2 residues within 4Å: Chain A: H.267, S.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.268 Water bridges: A:A.269 Salt bridges: A:H.267 SO4.8: 4 residues within 4Å: Chain B: Q.44, A.244, P.245, R.248 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.44 Salt bridges: B:R.248 SO4.9: 2 residues within 4Å: Chain B: T.382, R.415 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.415 SO4.10: 2 residues within 4Å: Chain B: H.267, S.268 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.268 Water bridges: B:A.269 Salt bridges: B:H.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2015-03-11

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein

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