SMTL ID : 4xgu.1 (1 other biounit)

Structure of C. elegans PCH-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: P.181, G.182, T.183, G.184, K.185, T.186, H.215 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.182, A:T.183, A:G.184, A:K.185, A:T.186, A:T.186 Salt bridges: A:K.185 SO4.3: 7 residues within 4Å: Chain C: P.180, P.181, G.182, T.183, G.184, K.185, T.186 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:P.181, C:G.184, C:K.185, C:T.186 Salt bridges: C:K.185 SO4.4: 6 residues within 4Å: Chain D: P.181, G.182, T.183, G.184, K.185, T.186 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.182, D:T.183, D:G.184, D:K.185, D:T.186, D:T.186 Salt bridges: D:K.185 SO4.5: 3 residues within 4Å: Chain D: P.22, K.23, K.99 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.23 Salt bridges: D:K.99 SO4.6: 5 residues within 4Å: Chain E: P.322, S.323, D.324, R.327, R.380 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:D.324, E:D.324 Salt bridges: E:R.327, E:R.380 SO4.7: 4 residues within 4Å: Chain E: F.325, I.358, R.365, F.373 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.365 SO4.9: 8 residues within 4Å: Chain F: P.180, P.181, G.182, T.183, G.184, K.185, T.186, H.215 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:P.181, F:T.183, F:G.184, F:K.185, F:T.186 Salt bridges: F:K.185

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain B: N.138, L.139, I.140, Y.141, P.180, P.181, G.182, T.183, G.184, K.185, T.186, S.187, N.300, M.330, G.384, R.385, S.388 Chain C: K.167 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:I.140, B:I.140, B:T.183, B:G.184, B:K.185, B:T.186, B:T.186, B:T.186, B:S.187, B:S.187, B:N.300, B:S.388 Salt bridges: B:K.185 ADP.8: 16 residues within 4Å: Chain E: N.138, L.139, I.140, Y.141, P.181, G.182, T.183, G.184, K.185, T.186, S.187, M.330, G.384, R.385, S.388 Chain F: K.167 15 PLIP interactions: 13 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:I.140, E:I.140, E:T.183, E:G.184, E:K.185, E:T.186, E:T.186, E:T.186, E:S.187, E:S.187, E:N.300, E:S.388, F:K.167 Salt bridges: E:K.185 Water bridges: F:N.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching. Elife (2015)

Release Date

2015-05-06

Peptides

Putative pachytene checkpoint protein 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Putative pachytene checkpoint protein 2

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