SMTL ID : 4xhb.1

Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with pentanediol and CHES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x 17Y: (1R,2S)-cyclopentane-1,2-diol(Non-covalent)

17Y.1: 5 residues within 4Å: Chain A: Y.212, T.213, Q.456, I.558, T.619 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.213, A:T.213, A:T.213, A:Q.456, A:Q.456 Water bridges: A:E.620

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.2: 12 residues within 4Å: Chain A: R.207, D.232, I.288, D.289, N.314, Y.451, Y.471, R.519, R.581, Y.615, S.635, W.636 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.288, A:N.314, A:Y.451, A:Y.451 Hydrogen bonds: A:D.232, A:Y.615 Water bridges: A:R.207 Salt bridges: A:R.207, A:R.519, A:R.581

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rogers, G.W. et al., The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB. To be published

Release Date

2016-01-27

Peptides

Sialidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sialidase B

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