SMTL ID : 4xhj.1 (1 other biounit)

gHgL of Varicella-zoster virus in complex with human neutralizing antibodies.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: L.725, F.781, N.783, T.785 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.725

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 7 residues within 4Å: Chain A: K.98, Y.99, S.102, D.134 Chain B: N.44, S.46, E.47 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.98 Hydrogen bonds: A:S.102, A:Y.99

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: E.212, A.213, T.216, N.217 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.212 Hydrogen bonds: A:T.216, A:N.217 NAG.4: 4 residues within 4Å: Chain A: Y.455, K.495, N.499, E.502 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.499 Hydrogen bonds: A:K.495, A:N.499, A:E.502

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xing, Y. et al., A site of varicella-zoster virus vulnerability identified by structural studies of neutralizing antibodies bound to the glycoprotein complex gHgL. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-05-13

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Fab-RC light chain: C
Fab-RC heavy chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Envelope glycoprotein H

Envelope glycoprotein L

Fab-RC light chain

Fab-RC heavy chain

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