SMTL ID : 4xi5.1

gHgL of varicella-zoster virus in complex with human neutralizing antibodies

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: K.98, Y.99, S.102 Chain B: N.44, S.46, E.47 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.98 Hydrogen bonds: A:S.102

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: H.193, K.194, A.213, N.217 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.194 Hydrogen bonds: A:N.217 NAG.3: 3 residues within 4Å: Chain A: N.499, T.501, E.502 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.499 Hydrogen bonds: A:T.501, A:T.501 NAG.4: 3 residues within 4Å: Chain A: F.781, N.783, T.785 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.783, A:T.785, A:T.785

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xing, Y. et al., A site of varicella-zoster virus vulnerability identified by structural studies of neutralizing antibodies bound to the glycoprotein complex gHgL. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-05-13

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Fab-94 light chain: C
Fab-94 heavy chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Envelope glycoprotein H

Envelope glycoprotein L

Fab-94 light chain

Fab-94 heavy chain

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