SMTL ID : 4xi6.2 (2 other biounits)

Crystal structure of the MZM-REP domains of Mind bomb 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.79, T.81, C.82, C.103, C.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.79, A:C.82, A:C.103, A:C.106 ZN.2: 5 residues within 4Å: Chain A: C.94, E.96, C.97, H.112, H.116 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.94, A:C.97, A:H.112, A:H.116 ZN.5: 5 residues within 4Å: Chain B: C.79, T.81, C.82, C.103, C.106 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.79, B:C.82, B:C.103, B:C.106 ZN.6: 5 residues within 4Å: Chain B: C.94, E.96, C.97, H.112, H.116 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.94, B:C.97, B:H.112, B:H.116

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.93, C.97, T.98, N.99 Chain B: R.2 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:C.97, A:N.99 Water bridges: A:K.93, A:K.93, A:T.98, A:T.98, B:R.2 Salt bridges: A:K.93, B:R.2 SO4.4: 5 residues within 4Å: Chain A: R.120, T.122, S.126, V.129, P.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.122, A:T.122 Water bridges: A:T.122 Salt bridges: A:R.120 SO4.7: 5 residues within 4Å: Chain A: R.2 Chain B: K.93, C.97, T.98, N.99 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:C.97, B:N.99 Water bridges: B:K.93, B:K.93, B:T.98, B:T.98, A:R.2 Salt bridges: B:K.93, A:R.2 SO4.8: 5 residues within 4Å: Chain B: R.120, T.122, S.126, V.129, P.226 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.122, B:T.122 Water bridges: B:T.122 Salt bridges: B:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMillan, B.J. et al., A tail of two sites: a bipartite mechanism for recognition of notch ligands by mind bomb e3 ligases. Mol.Cell (2015)

Release Date

2015-03-18

Peptides

E3 ubiquitin-protein ligase MIB1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

E3 ubiquitin-protein ligase MIB1

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