SMTL ID : 4xi7.1

Crystal structure of the MZM-REP domains of Mind bomb 1 in complex with Jagged1 N-box peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.79, T.81, C.82, C.103, C.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.79, A:C.82, A:C.103, A:C.106 ZN.2: 6 residues within 4Å: Chain A: C.94, E.96, C.97, H.112, H.113, H.116 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.94, A:C.97, A:H.112, A:H.116

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.93, C.97, T.98, N.99 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.97, A:N.99 Water bridges: A:K.93, A:T.98, A:T.98 Salt bridges: A:K.93 SO4.4: 4 residues within 4Å: Chain A: R.120, T.122, V.129, P.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.122, A:T.122 Water bridges: A:T.122, A:V.227 Salt bridges: A:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMillan, B.J. et al., A tail of two sites: a bipartite mechanism for recognition of notch ligands by mind bomb e3 ligases. Mol.Cell (2015)

Release Date

2015-03-18

Peptides

E3 ubiquitin-protein ligase MIB1: A
Jagged 1 N-box peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

E3 ubiquitin-protein ligase MIB1

Jagged 1 N-box peptide

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