- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x CD: CADMIUM ION(Non-covalent)
- 45 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.5: 8 residues within 4Å:- Chain A: P.141, W.142, R.152
- Chain C: F.156
- Ligands: TRS.14, CL.19, HEZ.23, HEZ.37
Ligand excluded by PLIPHEZ.6: 10 residues within 4Å:- Chain A: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255
- Ligands: HEZ.9
Ligand excluded by PLIPHEZ.7: 7 residues within 4Å:- Chain A: E.93, A.96, K.97, V.101, R.102, K.103, I.104
Ligand excluded by PLIPHEZ.8: 8 residues within 4Å:- Chain A: D.76, E.77, K.78, L.79, S.80
- Chain C: P.168, N.169
- Chain E: R.89
Ligand excluded by PLIPHEZ.9: 10 residues within 4Å:- Chain A: I.159, V.162, A.163, I.187, G.255, Y.258, H.259
- Chain B: S.147, H.148
- Ligands: HEZ.6
Ligand excluded by PLIPHEZ.10: 4 residues within 4Å:- Chain A: F.237, E.240, K.241
- Chain C: F.8
Ligand excluded by PLIPHEZ.11: 6 residues within 4Å:- Chain A: F.28, K.54, L.55, E.58, Y.197, V.199
Ligand excluded by PLIPHEZ.12: 6 residues within 4Å:- Chain A: P.195, N.196, Y.197, I.198, K.241, I.242
Ligand excluded by PLIPHEZ.23: 7 residues within 4Å:- Chain A: F.156
- Chain B: P.141, R.152
- Ligands: HEZ.5, TRS.14, CL.34, HEZ.37
Ligand excluded by PLIPHEZ.24: 10 residues within 4Å:- Chain B: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255
- Ligands: HEZ.26
Ligand excluded by PLIPHEZ.25: 7 residues within 4Å:- Chain B: E.93, A.96, K.97, V.101, R.102, K.103, I.104
Ligand excluded by PLIPHEZ.26: 9 residues within 4Å:- Chain B: I.159, A.163, I.187, G.255, Y.258, H.259
- Chain C: S.147, H.148
- Ligands: HEZ.24
Ligand excluded by PLIPHEZ.27: 8 residues within 4Å:- Chain A: L.167
- Chain B: G.73, T.74, T.75, D.76, S.217, Q.218, I.223
Ligand excluded by PLIPHEZ.28: 5 residues within 4Å:- Chain A: F.8, L.266
- Chain B: F.237, E.240, K.241
Ligand excluded by PLIPHEZ.29: 6 residues within 4Å:- Chain B: F.28, E.29, L.55, E.58, V.60, Y.197
Ligand excluded by PLIPHEZ.37: 8 residues within 4Å:- Chain B: F.156
- Chain C: P.141, W.142, R.152
- Ligands: HEZ.5, TRS.14, HEZ.23, CL.46
Ligand excluded by PLIPHEZ.38: 10 residues within 4Å:- Chain C: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255
- Ligands: HEZ.40
Ligand excluded by PLIPHEZ.39: 6 residues within 4Å:- Chain C: E.93, A.96, V.101, R.102, K.103, I.104
Ligand excluded by PLIPHEZ.40: 7 residues within 4Å:- Chain A: S.147, H.148
- Chain C: I.159, A.163, I.187, Y.258
- Ligands: HEZ.38
Ligand excluded by PLIPHEZ.41: 5 residues within 4Å:- Chain C: F.28, L.55, E.58, Y.197, V.199
Ligand excluded by PLIPHEZ.42: 6 residues within 4Å:- Chain C: P.195, N.196, Y.197, I.198, K.241, I.242
Ligand excluded by PLIPHEZ.51: 8 residues within 4Å:- Chain D: P.141, W.142, R.152
- Chain F: F.156
- Ligands: TRS.61, CL.66, HEZ.70, HEZ.86
Ligand excluded by PLIPHEZ.52: 10 residues within 4Å:- Chain D: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255
- Ligands: HEZ.54
Ligand excluded by PLIPHEZ.53: 5 residues within 4Å:- Chain D: P.195, N.196, Y.197, I.198, I.242
Ligand excluded by PLIPHEZ.54: 8 residues within 4Å:- Chain D: I.159, A.163, I.187, Y.258, H.259
- Chain E: S.147, H.148
- Ligands: HEZ.52
Ligand excluded by PLIPHEZ.55: 6 residues within 4Å:- Chain D: E.93, A.96, K.97, V.101, K.103, I.104
Ligand excluded by PLIPHEZ.56: 4 residues within 4Å:- Chain D: W.142, D.265
- Chain E: P.144, Y.145
Ligand excluded by PLIPHEZ.57: 5 residues within 4Å:- Chain D: E.113, L.114, P.115, Y.116, R.153
Ligand excluded by PLIPHEZ.58: 5 residues within 4Å:- Chain D: F.237, E.240, K.241
- Chain F: F.8, L.266
Ligand excluded by PLIPHEZ.59: 6 residues within 4Å:- Chain D: F.28, L.55, E.58, V.60, Y.197, V.199
Ligand excluded by PLIPHEZ.70: 8 residues within 4Å:- Chain D: F.156
- Chain E: P.141, W.142, R.152
- Ligands: HEZ.51, TRS.61, CL.83, HEZ.86
Ligand excluded by PLIPHEZ.71: 7 residues within 4Å:- Chain E: E.93, A.96, K.97, V.101, R.102, K.103, I.104
Ligand excluded by PLIPHEZ.72: 9 residues within 4Å:- Chain E: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255
Ligand excluded by PLIPHEZ.73: 8 residues within 4Å:- Chain D: L.167
- Chain E: G.73, T.74, T.75, D.76, S.217, Q.218, I.223
Ligand excluded by PLIPHEZ.74: 8 residues within 4Å:- Chain E: I.159, A.163, F.164, I.187, Y.258, H.259
- Chain F: S.147, H.148
Ligand excluded by PLIPHEZ.75: 5 residues within 4Å:- Chain E: W.142, K.194, D.265
- Chain F: P.144, Y.145
Ligand excluded by PLIPHEZ.76: 5 residues within 4Å:- Chain D: F.8, L.266
- Chain E: F.237, E.240, K.241
Ligand excluded by PLIPHEZ.77: 6 residues within 4Å:- Chain E: P.195, N.196, Y.197, I.198, K.241, I.242
Ligand excluded by PLIPHEZ.78: 8 residues within 4Å:- Chain E: F.28, E.29, K.54, L.55, E.58, V.60, Y.197, V.199
Ligand excluded by PLIPHEZ.86: 8 residues within 4Å:- Chain E: F.156
- Chain F: P.141, W.142, R.152
- Ligands: HEZ.51, TRS.61, HEZ.70, CL.95
Ligand excluded by PLIPHEZ.87: 10 residues within 4Å:- Chain F: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255
- Ligands: HEZ.88
Ligand excluded by PLIPHEZ.88: 9 residues within 4Å:- Chain D: S.147, H.148
- Chain F: I.159, A.163, I.187, G.255, Y.258, H.259
- Ligands: HEZ.87
Ligand excluded by PLIPHEZ.89: 7 residues within 4Å:- Chain F: E.93, A.96, K.97, V.101, R.102, K.103, I.104
Ligand excluded by PLIPHEZ.90: 6 residues within 4Å:- Chain F: F.28, L.55, E.58, V.60, Y.197, V.199
Ligand excluded by PLIPHEZ.91: 6 residues within 4Å:- Chain F: P.195, N.196, Y.197, I.198, K.241, I.242
Ligand excluded by PLIP- 8 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.13: 9 residues within 4Å:- Chain A: H.40, D.42, D.43, I.46, H.151, F.219
- Chain C: H.259, I.260
- Ligands: CD.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.40, A:D.42, A:Y.191, A:Y.191
- Water bridges: A:R.88, A:R.88
TRS.14: 12 residues within 4Å:- Chain A: Y.116, R.153
- Chain B: Y.116, R.153
- Chain C: Y.116, R.153
- Ligands: HEZ.5, CL.19, HEZ.23, CL.34, HEZ.37, CL.46
6 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: A:R.153, A:R.153, B:R.153, B:R.153, C:R.153, C:R.153
TRS.30: 10 residues within 4Å:- Chain A: H.259, I.260
- Chain B: H.40, D.42, D.43, I.46, H.151, Y.191, F.219
- Ligands: CD.20
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.40, B:D.42, B:Y.191, B:Y.191
- Water bridges: B:R.88, B:R.88
TRS.43: 9 residues within 4Å:- Chain B: H.259, I.260
- Chain C: H.40, D.42, D.43, I.46, H.151, Y.191
- Ligands: CD.35
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.40, C:D.42, C:Y.191, C:Y.191
- Water bridges: C:R.88, C:R.88
TRS.60: 9 residues within 4Å:- Chain D: H.40, D.42, D.43, I.46, H.151, F.219
- Chain F: H.259, I.260
- Ligands: CD.47
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.42, D:Y.191
- Water bridges: D:H.40, D:R.88, D:R.88
TRS.61: 12 residues within 4Å:- Chain D: Y.116, R.153
- Chain E: Y.116, R.153
- Chain F: Y.116, R.153
- Ligands: HEZ.51, CL.66, HEZ.70, CL.83, HEZ.86, CL.95
6 PLIP interactions:2 interactions with chain F, 2 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: F:R.153, F:R.153, D:R.153, D:R.153, E:R.153, E:R.153
TRS.79: 9 residues within 4Å:- Chain D: H.259, I.260
- Chain E: H.40, D.42, D.43, I.46, H.151, F.219
- Ligands: CD.67
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:H.40, E:Y.191
- Water bridges: E:R.88, E:R.88
TRS.92: 9 residues within 4Å:- Chain E: H.259, I.260
- Chain F: H.40, D.42, D.43, I.46, H.151, F.219
- Ligands: CD.84
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:D.42, F:Y.191
- Water bridges: F:H.40, F:R.88, F:R.88
- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.15: 5 residues within 4Å:- Chain A: M.1
- Chain B: E.225
- Ligands: CD.21, CL.31, CL.32
Ligand excluded by PLIPCL.16: 4 residues within 4Å:- Chain C: M.1
- Ligands: CD.2, CL.17, CL.18
Ligand excluded by PLIPCL.17: 5 residues within 4Å:- Chain A: E.225
- Chain C: M.1
- Ligands: CD.2, CL.16, CL.18
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain A: E.225
- Ligands: CD.2, CL.16, CL.17
Ligand excluded by PLIPCL.19: 6 residues within 4Å:- Chain A: P.149, R.152, R.153
- Chain C: Y.116
- Ligands: HEZ.5, TRS.14
Ligand excluded by PLIPCL.31: 5 residues within 4Å:- Chain A: M.1
- Chain B: E.225
- Ligands: CL.15, CD.21, CL.32
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain B: E.225
- Ligands: CL.15, CD.21, CL.31
Ligand excluded by PLIPCL.33: 4 residues within 4Å:- Chain B: M.1
- Ligands: CD.36, CL.44, CL.45
Ligand excluded by PLIPCL.34: 6 residues within 4Å:- Chain A: Y.116
- Chain B: P.149, R.152, R.153
- Ligands: TRS.14, HEZ.23
Ligand excluded by PLIPCL.44: 5 residues within 4Å:- Chain B: M.1
- Chain C: E.225
- Ligands: CL.33, CD.36, CL.45
Ligand excluded by PLIPCL.45: 4 residues within 4Å:- Chain C: E.225
- Ligands: CL.33, CD.36, CL.44
Ligand excluded by PLIPCL.46: 6 residues within 4Å:- Chain B: Y.116
- Chain C: P.149, R.152, R.153
- Ligands: TRS.14, HEZ.37
Ligand excluded by PLIPCL.62: 4 residues within 4Å:- Chain D: M.1
- Ligands: CD.68, CL.80, CL.81
Ligand excluded by PLIPCL.63: 5 residues within 4Å:- Chain D: E.225
- Chain F: M.1
- Ligands: CD.48, CL.64, CL.65
Ligand excluded by PLIPCL.64: 4 residues within 4Å:- Chain D: E.225
- Ligands: CD.48, CL.63, CL.65
Ligand excluded by PLIPCL.65: 5 residues within 4Å:- Chain D: E.225
- Chain F: M.1
- Ligands: CD.48, CL.63, CL.64
Ligand excluded by PLIPCL.66: 6 residues within 4Å:- Chain D: P.149, R.152, R.153
- Chain F: Y.116
- Ligands: HEZ.51, TRS.61
Ligand excluded by PLIPCL.80: 5 residues within 4Å:- Chain D: M.1
- Chain E: E.225
- Ligands: CL.62, CD.68, CL.81
Ligand excluded by PLIPCL.81: 4 residues within 4Å:- Chain E: E.225
- Ligands: CL.62, CD.68, CL.80
Ligand excluded by PLIPCL.82: 4 residues within 4Å:- Chain E: M.1
- Ligands: CD.85, CL.93, CL.94
Ligand excluded by PLIPCL.83: 6 residues within 4Å:- Chain D: Y.116
- Chain E: P.149, R.152, R.153
- Ligands: TRS.61, HEZ.70
Ligand excluded by PLIPCL.93: 5 residues within 4Å:- Chain E: M.1
- Chain F: E.225
- Ligands: CL.82, CD.85, CL.94
Ligand excluded by PLIPCL.94: 4 residues within 4Å:- Chain F: E.225
- Ligands: CL.82, CD.85, CL.93
Ligand excluded by PLIPCL.95: 6 residues within 4Å:- Chain E: Y.116
- Chain F: P.149, R.152, R.153
- Ligands: TRS.61, HEZ.86
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, T. et al., Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F (2015)
- Release Date
- 2015-06-10
- Peptides
- Uncharacterized protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x CD: CADMIUM ION(Non-covalent)
- 45 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 8 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, T. et al., Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F (2015)
- Release Date
- 2015-06-10
- Peptides
- Uncharacterized protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F