SMTL ID : 4xni.1

X-ray structure of PepTst1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

10 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78M.1: 2 residues within 4Å: Chain A: A.376 Ligands: 78M.3 No protein-ligand interaction detected (PLIP) 78M.2: 3 residues within 4Å: Chain A: W.243, A.248, I.255 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.255 78M.3: 5 residues within 4Å: Chain A: L.369, I.373, S.455 Ligands: 78M.1, 78M.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.373, A:I.373 78M.4: 5 residues within 4Å: Chain A: F.76, L.212, V.217, L.220, L.221 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.76, A:F.76, A:L.220, A:L.221 78M.5: 5 residues within 4Å: Chain A: A.103, P.105, H.176, S.180, F.187 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.187 Salt bridges: A:H.176 78M.6: 2 residues within 4Å: Chain A: Y.378 Ligands: 78M.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.378 78M.7: 6 residues within 4Å: Chain A: L.444, A.452, Y.453, Y.456, F.457, L.464 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.444, A:Y.456, A:F.457, A:F.457 78M.8: 3 residues within 4Å: Chain A: D.315, W.318, P.386 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.318, A:W.318, A:P.386 78M.9: 3 residues within 4Å: Chain A: Q.440, T.443, L.444 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.440, A:T.443 78M.10: 2 residues within 4Å: Chain A: W.90, F.124 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.124

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.11: 3 residues within 4Å: Chain A: D.48, A.108, S.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.108, A:S.109, A:S.109, A:S.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In meso in situ serial X-ray crystallography of soluble and membrane proteins. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-06-03

Peptides

Di-or tripeptide:H+ symporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Di-or tripeptide:H+ symporter

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