SMTL ID : 4xnj.1

X-ray structure of PepTst2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

13 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)(Non-functional Binders)

78M.1: 10 residues within 4Å: Chain A: I.234, M.238, W.243, S.245, A.248, N.251, L.252, I.255, A.259, F.263 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.234, A:N.251, A:I.255, A:I.255, A:A.259 Hydrogen bonds: A:W.243, A:S.245, A:S.245 78M.2: 4 residues within 4Å: Chain A: A.376 Ligands: 78M.3, 78M.10, 78M.11 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.376 78M.3: 8 residues within 4Å: Chain A: L.369, I.373, A.376, V.451, S.455 Ligands: 78M.2, 78M.10, 78M.11 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.373, A:I.373, A:A.376 Hydrogen bonds: A:S.455 Water bridges: A:G.375 78M.4: 7 residues within 4Å: Chain A: I.73, F.76, I.81, L.212, P.214, V.217, V.224 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.76, A:F.76, A:L.212, A:V.224 Water bridges: A:L.212 78M.5: 6 residues within 4Å: Chain A: M.96, A.173, H.176, S.180, I.184, F.187 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.184, A:F.187, A:F.187 78M.6: 8 residues within 4Å: Chain A: L.370, S.385, L.387, W.388, G.391, L.395, L.398 Ligands: 78M.11 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.370, A:L.370, A:W.388, A:L.395, A:L.398 Hydrogen bonds: A:S.385 78M.7: 5 residues within 4Å: Chain A: L.444, S.449, A.452, Y.456, F.457 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.444, A:Y.456, A:F.457 78M.8: 4 residues within 4Å: Chain A: V.469, F.470, K.473 Ligands: 78M.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.470, A:F.470 78M.9: 8 residues within 4Å: Chain A: W.318, F.319, W.323, F.324, L.327, L.330, P.386, L.387 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.319, A:F.324, A:L.327, A:L.330, A:P.386, A:L.387 78M.10: 3 residues within 4Å: Ligands: 78M.2, 78M.3, 78M.8 No protein-ligand interaction detected (PLIP) 78M.11: 6 residues within 4Å: Chain A: L.370, Y.378, W.388 Ligands: 78M.2, 78M.3, 78M.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.370, A:W.388, A:W.388 Hydrogen bonds: A:Y.378 78M.12: 8 residues within 4Å: Chain A: R.85, P.86, F.89, W.90, F.187, L.190, L.191, Y.194 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.89, A:F.187, A:L.190, A:L.191, A:Y.194, A:Y.194 Hydrogen bonds: A:R.85, A:R.85 78M.13: 11 residues within 4Å: Chain A: L.49, I.59, M.66, I.73, L.111, F.112, I.115, I.116, I.119, L.246, L.253 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.59, A:I.73, A:I.115, A:I.116, A:I.119

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.14: 5 residues within 4Å: Chain A: D.48, F.106, G.107, A.108, S.109 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.107, A:G.107, A:A.108, A:S.109, A:S.109, A:S.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In meso in situ serial X-ray crystallography of soluble and membrane proteins. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-06-03

Peptides

Di-or tripeptide:H+ symporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Di-or tripeptide:H+ symporter

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