SMTL ID : 4xnl.1

X-ray structure of AlgE2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

8 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.1: 5 residues within 4Å: Chain A: W.318, A.326, G.327, L.382, F.383 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.318, A:A.326, A:L.382 LDA.2: 10 residues within 4Å: Chain A: G.50, E.51, S.52, N.67, D.68, I.69, T.96, F.460, A.482, V.484 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.69, A:F.460, A:A.482, A:V.484 Salt bridges: A:D.68 LDA.3: 6 residues within 4Å: Chain A: I.69, G.70, I.71, A.94, A.95, T.96 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.69 LDA.4: 8 residues within 4Å: Chain A: Q.91, L.126, A.127, Y.190, R.191, T.192, L.194, D.195 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.126, A:T.192 LDA.5: 7 residues within 4Å: Chain A: L.177, I.211, T.213, I.221, G.222, V.223, I.257 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.177, A:I.211, A:I.221, A:V.223, A:I.257 LDA.6: 5 residues within 4Å: Chain A: F.148, G.149, E.166, Q.185, F.187 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.148, A:E.166, A:F.187 LDA.13: 4 residues within 4Å: Chain A: T.213, Q.214, W.215, I.221 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.215, A:W.215, A:W.215, A:W.215, A:I.221 LDA.14: 7 residues within 4Å: Chain A: I.71, L.73, A.92, A.94, S.124, Y.125, L.126 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.73, A:A.92, A:L.126

4 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78M.7: 9 residues within 4Å: Chain A: N.41, W.81, A.86, Y.87, F.88, F.131, W.132, V.133, G.149 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.88, A:V.133 78M.8: 7 residues within 4Å: Chain A: W.170, V.207, F.208, G.209, I.225, H.227, T.253 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.170, A:V.207 78M.10: 9 residues within 4Å: Chain A: L.430, L.432, F.460, G.463, L.464, T.478, M.479, H.480, A.482 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.430, A:L.432, A:F.460, A:H.480, A:A.482 Hydrogen bonds: A:T.478, A:H.480 78M.12: 4 residues within 4Å: Chain A: W.215, A.216, H.219, Y.274 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.219

1 x 78N: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78N.9: 5 residues within 4Å: Chain A: L.388, Y.392, K.436, I.458, F.460 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.392, A:Y.392, A:Y.392, A:K.436, A:I.458, A:I.458 Hydrogen bonds: A:Y.392

1 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.11: 10 residues within 4Å: Chain A: Q.159, W.160, W.254, S.277, A.278, T.279, G.311, F.344, Q.346, T.347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.277, A:T.279, A:Q.346

1 x CA: CALCIUM ION(Non-covalent)

CA.15: 4 residues within 4Å: Chain A: D.55, D.57, A.61, G.63 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.55, A:D.57, A:D.57, A:A.61, A:G.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In meso in situ serial X-ray crystallography of soluble and membrane proteins. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-06-03

Peptides

Alginate production protein AlgE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Alginate production protein AlgE

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