- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x GLU: GLUTAMIC ACID(Non-covalent)
- 10 x NA: SODIUM ION(Non-functional Binders)
NA.4: 3 residues within 4Å:- Chain A: D.448
- Ligands: NA.6, GOL.18
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.448, A:D.448, A:D.448
NA.5: 4 residues within 4Å:- Chain A: S.328, D.329, G.331, R.333
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.329, A:R.333
NA.6: 3 residues within 4Å:- Chain A: D.448, Y.540
- Ligands: NA.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.448
NA.7: 4 residues within 4Å:- Chain A: I.19, R.136, F.137, T.138
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.19, A:R.136
- Water bridges: A:T.138
NA.8: 1 residues within 4Å:- Chain A: E.367
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.103
- Water bridges: A:N.369
NA.9: 4 residues within 4Å:- Chain A: L.615, R.637, T.641
- Ligands: GLU.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.641, A:T.641
- Water bridges: A:R.637, A:R.637, A:R.682
NA.10: 5 residues within 4Å:- Chain A: R.345, D.562, Q.565, S.566
- Ligands: GOL.17
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.345, A:R.345, A:D.562
NA.11: 3 residues within 4Å:- Chain A: Q.15, I.16, L.134
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.15, A:I.16, A:L.134
NA.12: 3 residues within 4Å:- Chain A: E.422, D.428, S.430
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.422, A:D.428, A:S.430
- Water bridges: A:R.433
NA.13: 3 residues within 4Å:- Chain A: H.767, R.768, F.770
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.770, A:F.770
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 5 residues within 4Å:- Chain A: Y.664, R.665, V.666, E.667
- Ligands: GOL.19
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.666, A:E.667, A:E.667
GOL.15: 3 residues within 4Å:- Chain A: T.280, K.282, L.710
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.280
GOL.16: 3 residues within 4Å:- Chain A: T.68, W.70, K.71
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.68
GOL.17: 8 residues within 4Å:- Chain A: A.527, L.528, W.542, S.559, D.562, A.563, S.566
- Ligands: NA.10
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:L.528, A:S.559, A:D.562, A:S.566, A:S.566
- Water bridges: A:F.532
GOL.18: 5 residues within 4Å:- Chain A: D.448, D.449, Y.450, Q.523
- Ligands: NA.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.448, A:D.449, A:Y.450
- Water bridges: A:Y.457
GOL.19: 3 residues within 4Å:- Chain A: R.665, E.667
- Ligands: GOL.14
No protein-ligand interaction detected (PLIP)GOL.20: 5 residues within 4Å:- Chain A: M.256, Y.372, Y.377, E.378, R.821
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.378, A:E.378
- 2 x MLI: MALONATE ION(Non-functional Binders)
MLI.21: 6 residues within 4Å:- Chain A: F.700, H.701, A.703, Y.731, K.734, W.735
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.701
- Salt bridges: A:K.734, A:K.734
MLI.22: 7 residues within 4Å:- Chain A: N.255, M.256, N.268, K.270, P.775, N.776, R.779
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.255, A:N.776
- Water bridges: A:R.779, A:R.779
- Salt bridges: A:K.270, A:R.779, A:R.779
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Addlagatta, A. et al., Crystal Structure of E. coli Aminopeptidase N in complex with L-Glutamate. To Be Published
- Release Date
- 2016-01-20
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x GLU: GLUTAMIC ACID(Non-covalent)
- 10 x NA: SODIUM ION(Non-functional Binders)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 2 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Addlagatta, A. et al., Crystal Structure of E. coli Aminopeptidase N in complex with L-Glutamate. To Be Published
- Release Date
- 2016-01-20
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A