- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: E.68, R.69, L.187, A.188, R.216
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.68, A:R.69, A:R.216
- Water bridges: A:A.188, A:A.188
GOL.3: 3 residues within 4Å:- Chain A: L.89, R.171, L.220
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.171, A:R.171
GOL.6: 6 residues within 4Å:- Chain A: R.51, T.229, T.230
- Chain B: A.104, G.105
- Ligands: MES.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.51, A:R.51, A:T.230
GOL.7: 4 residues within 4Å:- Chain B: L.89, R.171, D.219, L.220
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.171, B:R.171
GOL.8: 3 residues within 4Å:- Chain B: L.252, H.255
- Chain C: R.256
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:H.255, C:R.256
GOL.9: 3 residues within 4Å:- Chain B: R.256
- Chain C: L.252, H.255
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.256
- Water bridges: B:L.252, B:R.256
GOL.10: 5 residues within 4Å:- Chain A: Y.103
- Chain B: R.51, T.229, T.230
- Ligands: MES.1
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.51, B:R.51, B:T.229, B:T.229, A:Y.103, A:Y.103
GOL.11: 5 residues within 4Å:- Chain B: E.68, R.69, L.187, A.188, R.216
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.216, B:R.216
- Water bridges: B:A.188
GOL.15: 5 residues within 4Å:- Chain C: E.68, R.69, P.71, L.187, R.216
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:E.68, C:R.216, C:R.216
- Water bridges: C:L.187, C:A.188
GOL.16: 5 residues within 4Å:- Chain C: R.51, T.230
- Chain D: Y.103, G.105, G.108
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:Y.103, C:R.51, C:R.51
- Water bridges: D:G.108
GOL.17: 4 residues within 4Å:- Chain C: R.39, R.40
- Chain D: E.312, D.316
2 PLIP interactions:2 interactions with chain D- Water bridges: D:L.339, D:R.343
GOL.18: 2 residues within 4Å:- Chain C: A.293, S.296
3 PLIP interactions:3 interactions with chain C- Water bridges: C:Q.294, C:S.296, C:S.296
GOL.22: 4 residues within 4Å:- Chain D: R.69, L.187, A.188, R.216
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.69, D:L.187, D:R.216
GOL.23: 3 residues within 4Å:- Chain D: L.89, R.171, A.223
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.171, D:R.171
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 2 residues within 4Å:- Chain A: R.171, D.217
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain B: R.171, D.192, D.217
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain C: R.171, D.192
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain D: R.171, D.192, L.220
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain D: M.340, T.341
- Ligands: MES.21
Ligand excluded by PLIP- 2 x FMT: FORMIC ACID(Non-functional Binders)
FMT.12: 4 residues within 4Å:- Chain B: E.61, P.71, F.72, A.73
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.73, B:A.73
- Water bridges: B:R.225
FMT.19: 6 residues within 4Å:- Chain C: L.89, R.171, D.217, D.219, L.220, A.223
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.171, C:R.171, C:D.217
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yennamalli, R.M. et al., The crystal structure of cystathione gamma lyase (CalE6) from Micromonospora echinospora. To Be Published
- Release Date
- 2015-04-15
- Peptides
- CalE6: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yennamalli, R.M. et al., The crystal structure of cystathione gamma lyase (CalE6) from Micromonospora echinospora. To Be Published
- Release Date
- 2015-04-15
- Peptides
- CalE6: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H