SMTL ID : 4xtr.1

Structure of Get3 bound to the transmembrane domain of Pep12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-2-2-2-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 22 residues within 4Å: Chain A: K.26, G.28, V.29, G.30, K.31, T.32, T.33, N.272, Q.273, P.315, L.316, C.317, G.319, I.321, F.330 Chain B: K.26, I.243, E.245, L.247, R.291 Ligands: MG.2, ATP.4 20 PLIP interactions: 13 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:N.272, A:N.272, A:Q.273, A:C.317, B:E.245, B:E.245 Water bridges: A:N.57, B:K.26, B:K.26, B:K.26 Salt bridges: A:K.31, B:K.26, B:K.26 ADP.5: 22 residues within 4Å: Chain A: K.26, I.243, E.245, L.247, R.291 Chain B: K.26, G.28, V.29, G.30, K.31, T.32, T.33, N.272, Q.273, P.315, L.316, C.317, G.319, I.321, F.330 Ligands: MG.6, ATP.7 22 PLIP interactions: 7 interactions with chain A, 15 interactions with chain B Hydrogen bonds: A:E.245, B:G.28, B:V.29, B:G.30, B:K.31, B:T.32, B:T.33, B:T.33, B:N.272, B:N.272, B:C.317 Water bridges: A:K.26, A:K.26, A:K.26, A:R.291, B:T.32, B:T.33, B:D.166, B:I.321 Salt bridges: A:K.26, A:K.26, B:K.31

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.31, T.32, N.57, N.61 Ligands: ADP.1, ATP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.32, H2O.1, H2O.1, H2O.3 MG.6: 6 residues within 4Å: Chain B: K.31, T.32, N.57, N.61 Ligands: ADP.5, ATP.7 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.32, H2O.6, H2O.7, H2O.9

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.285, C.288 Chain B: C.285, C.288 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.285, A:C.288, B:C.285, B:C.288

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 25 residues within 4Å: Chain A: G.27, G.28, V.29, G.30, K.31, T.32, T.33, N.57, P.169, N.272, Q.273, P.315, L.316, C.317, G.319, I.321, F.330 Chain B: K.26, G.27, I.243, E.245, L.247, R.291 Ligands: ADP.1, MG.2 26 PLIP interactions: 17 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:N.57, A:N.272, A:N.272, A:Q.273, A:C.317, B:G.27, B:E.245, B:E.245 Water bridges: A:T.32, A:T.33, A:I.321, B:K.26, B:K.26, B:K.26 Salt bridges: A:K.31, A:K.31, B:K.26, B:K.26, B:K.26 ATP.7: 25 residues within 4Å: Chain A: K.26, G.27, I.243, E.245, L.247, R.291 Chain B: G.27, G.28, V.29, G.30, K.31, T.32, T.33, N.57, P.169, N.272, Q.273, P.315, L.316, C.317, G.319, I.321, F.330 Ligands: ADP.5, MG.6 26 PLIP interactions: 17 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:G.28, B:V.29, B:G.30, B:K.31, B:T.32, B:T.33, B:T.33, B:N.57, B:N.272, B:N.272, B:C.317, A:G.27, A:E.245, A:E.245 Water bridges: B:T.32, B:T.32, B:T.33, B:I.321, A:K.26, A:K.26, A:R.291 Salt bridges: B:K.31, B:K.31, A:K.26, A:K.26, A:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mateja, A. et al., Protein targeting. Structure of the Get3 targeting factor in complex with its membrane protein cargo. Science (2015)

Release Date

2015-03-18

Peptides

ATPase GET3: AB
Antibody Heavy chain: CE
Antibody Light chain: DF
Pep12p: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

D
D

F
F

G
G

ATPase GET3

Antibody Heavy chain

Antibody Light chain

Pep12p

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