SMTL ID : 4xwo.2 (3 other biounits)

Structure of Get3 bound to the transmembrane domain of Sec22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-2-2-2-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.32 Ligands: ADP.3, ATP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.32, H2O.1, H2O.1, H2O.1 MG.5: 4 residues within 4Å: Chain B: T.32, N.61 Ligands: ADP.6, ATP.7 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.32, H2O.2, H2O.2, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.285, C.288 Chain B: C.285, C.288 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.285, B:C.288, A:C.285, A:C.288

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.3: 22 residues within 4Å: Chain A: K.26, G.28, V.29, G.30, K.31, T.32, T.33, N.272, Q.273, P.315, L.316, C.317, G.319, I.321, F.330 Chain B: K.26, I.243, E.245, L.247, R.291 Ligands: MG.1, ATP.4 19 PLIP interactions: 14 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:N.272, A:N.272, A:Q.273, A:C.317, B:E.245, B:E.245, B:R.291 Water bridges: A:T.32, A:T.32 Salt bridges: A:K.31, B:K.26, B:K.26 ADP.6: 22 residues within 4Å: Chain A: K.26, I.243, E.245, F.246, L.247, R.291 Chain B: K.26, G.28, V.29, G.30, K.31, T.32, T.33, N.272, Q.273, P.315, L.316, C.317, I.321, F.330 Ligands: MG.5, ATP.7 21 PLIP interactions: 17 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.28, B:V.29, B:G.30, B:K.31, B:T.32, B:T.32, B:T.33, B:T.33, B:N.272, B:Q.273, B:P.315, B:C.317, A:E.245 Water bridges: B:T.32, B:T.32, B:N.57, B:N.57, A:K.26 Salt bridges: B:K.31, A:K.26, A:K.26

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 24 residues within 4Å: Chain A: G.27, G.28, V.29, G.30, K.31, T.32, T.33, N.57, N.272, Q.273, P.315, L.316, C.317, G.319, I.321, F.330 Chain B: K.26, G.27, I.243, E.245, L.247, R.291 Ligands: MG.1, ADP.3 25 PLIP interactions: 18 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:N.57, A:N.272, A:N.272, A:Q.273, A:C.317, B:G.27, B:E.245, B:E.245, B:R.291 Water bridges: A:T.32, A:T.32, A:T.32, A:N.61 Salt bridges: A:K.31, A:K.31, B:K.26, B:K.26, B:K.26 ATP.7: 25 residues within 4Å: Chain A: K.26, G.27, I.243, E.245, F.246, L.247, R.291 Chain B: G.27, G.28, V.29, G.30, K.31, T.32, T.33, N.57, P.169, N.272, Q.273, P.315, L.316, C.317, I.321, F.330 Ligands: MG.5, ADP.6 25 PLIP interactions: 18 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:G.28, B:V.29, B:G.30, B:K.31, B:T.32, B:T.32, B:T.33, B:T.33, B:N.57, B:N.272, B:N.272, B:Q.273, B:C.317, A:G.27, A:E.245 Water bridges: B:T.32, B:N.61, B:D.166, A:K.26, A:K.26 Salt bridges: B:K.31, B:K.31, A:K.26, A:K.26, A:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mateja, A. et al., Protein targeting. Structure of the Get3 targeting factor in complex with its membrane protein cargo. Science (2015)

Release Date

2015-03-25

Peptides

ATPase GET3: AB
Antibody heavy chain: CE
Antibody light chain: DF
Sec22: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

E
K

D
J

F
L

G
g

ATPase GET3

Antibody heavy chain

Antibody light chain

Sec22

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