SMTL ID : 4xva.2 (3 other biounits)

Crystal structure of wild type cytochrome c peroxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: P.43, V.44, R.47, W.50, P.144, D.145, A.146, F.157, L.170, M.171, A.173, H.174, G.177, K.178, T.179, H.180, N.183, S.184, W.190, L.231, T.233, F.265 26 PLIP interactions: 25 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:P.43, A:R.47, A:W.50, A:W.50, A:W.50, A:P.144, A:A.146, A:F.157, A:L.170, A:A.173, A:T.179, A:W.190, A:L.231, A:F.265 Hydrogen bonds: A:K.178, A:H.180, A:N.183, A:S.184 Water bridges: A:V.44, A:R.47 Salt bridges: A:R.47, A:H.180, A:H.180 pi-Stacking: A:W.50 Metal complexes: A:H.174, H2O.3

1 x BZI: BENZIMIDAZOLE(Non-covalent)

BZI.2: 7 residues within 4Å: Chain A: F.88, L.91, E.92, H.95, S.103, L.106, F.107 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.88, A:F.88, A:L.91, A:E.92, A:E.92, A:L.106, A:F.107 pi-Stacking: A:H.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fischer, M. et al., One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. Chembiochem (2015)

Release Date

2015-02-25

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cytochrome c peroxidase, mitochondrial

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