SMTL ID : 4xva.3 (3 other biounits)

Crystal structure of wild type cytochrome c peroxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 21 residues within 4Å: Chain A: P.43, V.44, V.46, R.47, W.50, P.144, D.145, L.170, M.171, A.173, H.174, L.176, G.177, K.178, T.179, H.180, N.183, S.184, W.190, L.231, T.233 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:V.46, A:R.47, A:W.50, A:W.50, A:W.50, A:P.144, A:A.173, A:T.179, A:W.190, A:L.231 Hydrogen bonds: A:K.178, A:H.180, A:N.183 Salt bridges: A:R.47, A:H.180, A:H.180 pi-Stacking: A:W.50 pi-Cation interactions: A:R.47 Metal complexes: A:H.174

1 x BZI: BENZIMIDAZOLE(Non-covalent)

BZI.2: 8 residues within 4Å: Chain A: R.71, F.88, L.91, E.92, H.95, S.103, L.106, F.107 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.92, A:E.92, A:H.95, A:L.106, A:F.107 pi-Stacking: A:F.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fischer, M. et al., One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. Chembiochem (2015)

Release Date

2015-02-25

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Cytochrome c peroxidase, mitochondrial

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