SMTL ID : 4xwg.1

Crystal Structure of LCAT (C31Y) in complex with Fab1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-mer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: E.161 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.161, A:E.161 ZN.2: 2 residues within 4Å: Chain A: A.112, H.198 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.198 ZN.3: 1 residues within 4Å: Chain A: E.204 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.204, A:E.204 ZN.4: 2 residues within 4Å: Chain A: D.139 Chain B: H.177 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.177, A:D.139, A:D.139 ZN.8: 1 residues within 4Å: Chain C: H.263 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.263, C:H.263 ZN.9: 2 residues within 4Å: Chain C: S.181, H.377 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.377, H2O.3 ZN.10: 1 residues within 4Å: Chain C: D.262 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.262, C:D.262 ZN.11: 1 residues within 4Å: Chain C: H.122 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.122 ZN.12: 1 residues within 4Å: Chain C: H.168 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.168 ZN.13: 1 residues within 4Å: Chain C: H.389 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.389 ZN.14: 1 residues within 4Å: Chain C: H.373 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.373 ZN.15: 3 residues within 4Å: Chain C: D.44, D.77, R.80 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.44, C:D.44 ZN.16: 1 residues within 4Å: Chain C: E.354 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.354, C:E.354 ZN.17: 1 residues within 4Å: Chain C: H.368 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.368 ZN.18: 1 residues within 4Å: Chain C: D.73 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.73, C:D.73 ZN.19: 1 residues within 4Å: Chain C: H.329 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.329

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain C: N.84, S.86, S.87 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.84, C:S.87 NAG.6: 3 residues within 4Å: Chain C: S.267, P.269, N.272 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.267 NAG.7: 2 residues within 4Å: Chain C: N.384, E.388 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Piper, D.E. et al., The high-resolution crystal structure of human LCAT. J.Lipid Res. (2015)

Release Date

2015-07-29

Peptides

Fab1 Light Chain: A
Fab1 Heavy Chain: B
Phosphatidylcholine-sterol acyltransferase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

Fab1 Light Chain

Fab1 Heavy Chain

Phosphatidylcholine-sterol acyltransferase

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