SMTL ID : 4xyl.1

Ca. Korarchaeum cryptofilum ACD1 in complex with coenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 8 residues within 4Å: Chain A: S.160, G.161, A.162, L.163 Chain C: G.307, G.308, G.309, A.310 Ligand excluded by PLIP CL.3: 8 residues within 4Å: Chain A: G.307, G.308, G.309, A.310 Chain C: S.160, G.161, A.162, L.163 Ligand excluded by PLIP

2 x COA: COENZYME A(Non-covalent)

COA.2: 24 residues within 4Å: Chain A: V.16, G.17, A.18, S.19, K.24, I.25, I.45, N.46, P.47, P.59, S.74, V.75, P.76, K.79, V.83, I.98, T.99, S.100, N.129, I.130, F.131, F.144, G.161, I.165 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.25, A:T.99 Hydrogen bonds: A:S.19, A:S.19, A:N.46, A:I.98, A:S.100 Water bridges: A:K.20, A:K.24, A:K.24, A:K.24, A:K.79, A:V.83 Salt bridges: A:K.24, A:K.24, A:K.24 COA.4: 26 residues within 4Å: Chain C: V.16, G.17, A.18, S.19, K.20, K.24, I.25, I.45, N.46, P.47, P.59, S.74, V.75, P.76, S.77, K.79, V.83, I.98, T.99, S.100, N.129, I.130, F.131, F.144, G.161, I.165 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:I.25, C:T.99 Hydrogen bonds: C:S.19, C:N.46, C:N.46, C:I.98, C:S.100 Water bridges: C:K.20 Salt bridges: C:K.24, C:K.24, C:K.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weie, R.H. et al., Structure of NDP-forming Acetyl-CoA synthetase ACD1 reveals a large rearrangement for phosphoryl transfer. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-01-27

Peptides

alpha subunit of Acyl-CoA synthetase (NDP forming): AC
beta subunit of Acyl-CoA synthetase (NDP forming): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

alpha subunit of Acyl-CoA synthetase (NDP forming)

beta subunit of Acyl-CoA synthetase (NDP forming)

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