- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x HG: MERCURY (II) ION(Non-covalent)
HG.2: 6 residues within 4Å:- Chain A: N.46, A.49, C.57, Y.58, P.59
- Ligands: CL.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:N.46, A:A.49, A:C.57
HG.4: 6 residues within 4Å:- Chain A: V.16, V.61, V.83, D.86, C.87
- Ligands: CL.3
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:V.83, A:C.87
HG.5: 8 residues within 4Å:- Chain A: V.154, F.156, T.171, I.176, I.178, M.209, F.284, T.287
No protein-ligand interaction detected (PLIP)HG.7: 8 residues within 4Å:- Chain A: A.310, L.380, Y.381, C.382, V.414, P.437
- Chain C: L.163
- Ligands: CL.6
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.382, H2O.4
HG.12: 6 residues within 4Å:- Chain C: N.46, A.49, C.57, Y.58, P.59
- Ligands: CL.11
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:N.46, C:A.49, C:C.57
HG.14: 6 residues within 4Å:- Chain C: V.16, V.61, V.83, D.86, C.87
- Ligands: CL.13
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:V.83, C:C.87
HG.15: 8 residues within 4Å:- Chain C: V.154, F.156, T.171, I.176, I.178, M.209, F.284, T.287
No protein-ligand interaction detected (PLIP)HG.17: 7 residues within 4Å:- Chain A: L.163
- Chain C: A.310, L.380, Y.381, C.382, V.414
- Ligands: CL.16
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:C.382, H2O.11
- 2 x COA: COENZYME A(Non-covalent)
COA.8: 25 residues within 4Å:- Chain A: V.16, G.17, A.18, S.19, K.24, I.25, I.45, N.46, P.47, P.59, S.74, V.75, P.76, K.79, V.83, I.98, T.99, S.100, N.129, I.130, F.131, F.144, G.161, A.162, I.165
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:I.25
- Hydrogen bonds: A:S.19, A:S.19, A:I.45, A:N.46, A:I.98, A:S.100
- Water bridges: A:K.24, A:K.24, A:S.74, A:S.77, A:K.79, A:V.83
- Salt bridges: A:K.24, A:K.24, A:K.24
COA.18: 26 residues within 4Å:- Chain A: M.355
- Chain C: V.16, G.17, A.18, S.19, K.24, I.25, I.45, N.46, P.47, P.59, S.74, V.75, P.76, K.79, V.83, I.98, T.99, S.100, N.129, I.130, F.131, F.144, G.161, A.162, I.165
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:I.25
- Hydrogen bonds: C:S.19, C:I.45, C:N.46, C:N.46, C:K.79, C:S.100, C:N.129
- Water bridges: C:K.20, C:K.24, C:K.24, C:K.24, C:I.25, C:V.83
- Salt bridges: C:K.24, C:K.24, C:K.24
- 2 x A12: PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
A12.9: 22 residues within 4Å:- Chain B: K.24, T.35, V.58, K.60, V.67, H.68, K.69, S.70, D.71, V.75, V.77, Q.111, E.112, F.113, A.114, E.119, N.211, P.212, I.214, V.223, D.224
- Ligands: CA.10
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:K.60, B:V.67, B:K.69, B:K.69, B:S.70, B:Q.111, B:A.114, B:E.119, B:D.224
- Water bridges: B:D.71
A12.20: 22 residues within 4Å:- Chain D: K.24, T.35, V.58, K.60, V.67, H.68, K.69, S.70, D.71, V.75, V.77, Q.111, E.112, F.113, A.114, E.119, N.211, P.212, I.214, V.223, D.224
- Ligands: CA.21
11 PLIP interactions:10 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:K.60, D:K.69, D:K.69, D:S.70, D:Q.111, D:A.114, D:E.119, D:D.224
- Water bridges: D:H.68, D:S.70, B:R.178
- 2 x CA: CALCIUM ION(Non-covalent)
CA.10: 4 residues within 4Å:- Chain B: N.211, P.212, D.224
- Ligands: A12.9
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:N.211, B:D.224, H2O.8, H2O.8, H2O.8
CA.21: 4 residues within 4Å:- Chain D: N.211, P.212, D.224
- Ligands: A12.20
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:N.211, D:D.224, H2O.16, H2O.16, H2O.17
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weie, R.H. et al., Structure of NDP-forming Acetyl-CoA synthetase ACD1 reveals a large rearrangement for phosphoryl transfer. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-01-27
- Peptides
- alpha subunit of Acyl-CoA synthetase (NDP forming): AC
beta subunit of Acyl-CoA synthetase (NDP forming): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x HG: MERCURY (II) ION(Non-covalent)
- 2 x COA: COENZYME A(Non-covalent)
- 2 x A12: PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weie, R.H. et al., Structure of NDP-forming Acetyl-CoA synthetase ACD1 reveals a large rearrangement for phosphoryl transfer. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-01-27
- Peptides
- alpha subunit of Acyl-CoA synthetase (NDP forming): AC
beta subunit of Acyl-CoA synthetase (NDP forming): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D