- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.67 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
FBP.2: 14 residues within 4Å:- Chain A: A.419, R.480, T.537, V.538, S.539, N.541, M.582, G.583, G.584, E.638, H.670, Q.673
- Chain B: R.575, R.664
13 PLIP interactions:11 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.480, A:S.539, A:S.539, A:G.583, A:G.584, A:E.638, A:E.638, A:Q.673
- Salt bridges: A:R.480, A:R.480, A:H.670, B:R.575, B:R.664
FBP.4: 12 residues within 4Å:- Chain A: R.575, R.664
- Chain B: R.480, T.537, V.538, S.539, N.541, M.582, G.583, E.638, H.670, Q.673
13 PLIP interactions:11 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.480, B:R.480, B:S.539, B:N.541, B:N.541, B:G.583, B:E.638, B:Q.673
- Salt bridges: B:R.480, B:R.480, B:H.670, A:R.575, A:R.664
FBP.8: 14 residues within 4Å:- Chain C: A.419, R.480, T.537, V.538, S.539, N.541, M.582, G.583, G.584, E.638, H.670, Q.673
- Chain D: R.575, R.664
13 PLIP interactions:11 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:R.480, C:S.539, C:N.541, C:G.583, C:G.584, C:E.638, C:E.638, C:Q.673
- Salt bridges: C:R.480, C:R.480, C:H.670, D:R.575, D:R.664
FBP.11: 11 residues within 4Å:- Chain C: R.664
- Chain D: A.419, R.480, T.537, S.539, N.541, M.582, G.583, E.638, H.670, Q.673
12 PLIP interactions:11 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:R.480, D:T.537, D:S.539, D:G.583, D:G.584, D:E.638, D:E.638, D:Q.673
- Salt bridges: D:R.480, D:R.480, D:H.670, C:R.664
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 15 residues within 4Å:- Chain B: S.31, G.32, G.33, Y.63, A.95, R.96, C.97, F.100, R.101, G.126, D.127, G.128, S.129, G.132, L.135
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.31, B:S.31, B:G.33, B:R.96, B:R.96, B:C.97, B:C.97, B:R.101, B:G.126, B:D.127, B:G.128, B:S.129
- Salt bridges: B:R.96
- pi-Cation interactions: B:R.101
ADP.10: 18 residues within 4Å:- Chain D: S.31, G.32, G.33, Y.63, A.95, R.96, C.97, F.100, R.101, G.125, G.126, D.127, G.128, S.129, T.131, G.132, L.135, R.218
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:S.31, D:G.33, D:A.95, D:C.97, D:C.97, D:G.126, D:D.127, D:G.128, D:S.129, D:T.131, D:R.218
- pi-Cation interactions: D:R.101
- 2 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)
F6P.5: 10 residues within 4Å:- Chain A: R.209, R.300
- Chain B: I.173, D.174, M.216, G.217, R.218, E.272, H.306, R.309
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:D.174, B:G.217, B:R.218, B:E.272, B:R.309
- Salt bridges: B:H.306, B:R.309, A:R.209, A:R.300
F6P.12: 9 residues within 4Å:- Chain C: R.209, R.300
- Chain D: I.173, D.174, M.216, R.218, E.272, H.306, R.309
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:D.174, D:R.218, D:E.272, D:R.309
- Salt bridges: D:H.306, D:R.309, C:R.209, C:R.300
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kloos, M. et al., Crystal structure of human platelet phosphofructokinase-1 locked in an activated conformation. Biochem.J. (2015)
- Release Date
- 2015-06-03
- Peptides
- ATP-dependent 6-phosphofructokinase, platelet type: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.67 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kloos, M. et al., Crystal structure of human platelet phosphofructokinase-1 locked in an activated conformation. Biochem.J. (2015)
- Release Date
- 2015-06-03
- Peptides
- ATP-dependent 6-phosphofructokinase, platelet type: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D