SMTL ID : 4y2r.1

Structure of soluble epoxide hydrolase in complex with 2-(piperazin-1-yl)nicotinonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:D.11, A:D.185 MG.3: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.9, B:D.11, B:D.185

2 x 49O: 2-(piperazin-1-yl)pyridine-3-carbonitrile(Non-covalent)

49O.2: 8 residues within 4Å: Chain A: F.267, D.335, Y.383, L.408, M.419, Y.466, H.524, W.525 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.408, A:W.525 Hydrogen bonds: A:D.335, A:Y.383 49O.4: 8 residues within 4Å: Chain B: F.267, D.335, Y.383, L.408, M.419, Y.466, H.524, W.525 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.408, B:W.525 Hydrogen bonds: B:D.335, B:Y.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amano, Y. et al., Identification of N-ethylmethylamine as a novel scaffold for inhibitors of soluble epoxide hydrolase by crystallographic fragment screening. Bioorg.Med.Chem. (2015)

Release Date

2015-05-06

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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