SMTL ID : 4y2x.1

Structure of soluble epoxide hydrolase in complex with 2-({[2-(adamantan-1-yl)ethyl]amino}methyl)phenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:D.11, A:D.185 MG.3: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.9, B:D.11, B:D.185

2 x 4A0: 2-[({2-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-yl]ethyl}amino)methyl]phenol(Non-covalent)

4A0.2: 11 residues within 4Å: Chain A: F.267, D.335, W.336, T.360, Y.383, Q.384, L.408, M.419, Y.466, L.499, W.525 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.267, A:W.336, A:W.336, A:T.360, A:Y.383, A:L.408, A:L.499, A:W.525 Hydrogen bonds: A:Y.383, A:Y.383, A:Q.384, A:Y.466 4A0.4: 11 residues within 4Å: Chain B: F.267, D.335, W.336, T.360, Y.383, Q.384, L.408, M.419, Y.466, L.499, W.525 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.267, B:W.336, B:W.336, B:T.360, B:Y.383, B:L.408, B:L.499, B:W.525 Hydrogen bonds: B:Y.383, B:Q.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amano, Y. et al., Identification of N-ethylmethylamine as a novel scaffold for inhibitors of soluble epoxide hydrolase by crystallographic fragment screening. Bioorg.Med.Chem. (2015)

Release Date

2015-05-06

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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