SMTL ID : 4y2y.1

Structure of soluble epoxide hydrolase in complex with 2-(2-fluorophenyl)-N-[(5-methyl-2-thienyl)methyl]ethanamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:D.11, A:D.185 MG.3: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.9, B:D.11, B:D.185

2 x 49Z: 2-(2-fluorophenyl)-N-[(5-methylthiophen-2-yl)methyl]ethanamine(Non-covalent)

49Z.2: 11 residues within 4Å: Chain A: F.267, D.335, W.336, M.339, Y.383, Q.384, L.408, Y.466, L.499, H.524, W.525 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.336, A:M.339, A:Y.383, A:L.408, A:Y.466, A:W.525 Hydrogen bonds: A:Y.466, A:Y.466 pi-Stacking: A:W.336 49Z.4: 11 residues within 4Å: Chain B: F.267, D.335, W.336, M.339, Y.383, Q.384, L.408, Y.466, L.499, H.524, W.525 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.336, B:M.339, B:Y.383, B:L.408, B:Y.466, B:W.525 Hydrogen bonds: B:Y.466 pi-Stacking: B:W.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amano, Y. et al., Identification of N-ethylmethylamine as a novel scaffold for inhibitors of soluble epoxide hydrolase by crystallographic fragment screening. Bioorg.Med.Chem. (2015)

Release Date

2015-05-06

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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