SMTL ID : 4y5x.2 (1 other biounit)

Diabody 305 complex with EpoR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-2-2-2-mer

Ligands

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain B: Q.38, L.40, S.60, F.63, E.82, D.83 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.38 PEG.2: 4 residues within 4Å: Chain C: R.169, R.195 Chain F: R.169, R.195 7 PLIP interactions: 3 interactions with chain F, 4 interactions with chain C Hydrogen bonds: F:R.169, F:R.195, F:R.195, C:R.169, C:R.169, C:R.195, C:R.195 PEG.3: 3 residues within 4Å: Chain D: S.61, R.79, N.81 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.81 PEG.4: 4 residues within 4Å: Chain D: A.47, K.50, E.53 Chain E: Q.1 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.47, D:E.53 PEG.5: 6 residues within 4Å: Chain E: Q.38, G.58, V.59, S.60, F.63, D.83 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:Q.38, E:G.58, E:S.60, E:D.83, E:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moraga, I. et al., Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands. Cell (2015)

Release Date

2015-03-18

Peptides

diabody 310 VL domain: AD
diabody 310 VH domain: BE
Erythropoietin receptor: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

D
G

B
E

E
H

C
F

F
I

diabody 310 VL domain

diabody 310 VH domain

Erythropoietin receptor

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