SMTL ID : 6moj.1

Dimeric DARPin A_angle_R5 complex with EpoR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-2-2-mer

Ligands

6 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.1: 3 residues within 4Å: Chain A: M.164, H.165, G.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.164 TAR.2: 2 residues within 4Å: Chain A: E.98, Y.99 No protein-ligand interaction detected (PLIP) TAR.3: 6 residues within 4Å: Chain B: Q.168, V.170, V.180, L.181, S.182, N.183 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.168, B:V.180, B:S.182, B:N.183 TAR.7: 3 residues within 4Å: Chain C: M.164, H.165, G.166 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:M.164 TAR.8: 2 residues within 4Å: Chain C: E.98, Y.99 No protein-ligand interaction detected (PLIP) TAR.9: 6 residues within 4Å: Chain D: Q.168, V.170, V.180, L.181, S.182, N.183 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.168, D:V.180, D:S.182, D:N.183

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain B: D.157, A.193, W.210 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.157 GOL.5: 2 residues within 4Å: Chain B: R.169, R.195 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.169, B:R.169, B:R.195, B:R.195 GOL.6: 3 residues within 4Å: Chain B: R.128, L.129, D.131 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.128 GOL.10: 3 residues within 4Å: Chain D: D.157, A.193, W.210 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.157 GOL.11: 2 residues within 4Å: Chain D: R.169, R.195 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.169, D:R.169, D:R.195, D:R.195 GOL.12: 3 residues within 4Å: Chain D: R.128, L.129, D.131 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohan, K. et al., Topological control of cytokine receptor signaling induces differential effects in hematopoiesis. Science (2019)

Release Date

2019-06-05

Peptides

Dimeric DARPin ACR5 (A_angle_R5): AC
Erythropoietin receptor: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Dimeric DARPin ACR5 (A_angle_R5)

Erythropoietin receptor

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